Cluster: Rep_476_CGC67
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate: beta-glucan
- Genome ID: Rep_476
- CGC Family ID: CGCFAM_00934
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_476_c_221 | Rep_476_c_221_21 | 28846 | 30528 | - | 1.B.14.6.1 |
| TC | Rep_476_c_221 | Rep_476_c_221_22 | 30538 | 32112 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_476_c_221 | Rep_476_c_221_23 | 32170 | 32283 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_476_c_221 | Rep_476_c_221_24 | 32347 | 33318 | - | GH5_2 |
| CAZyme | Rep_476_c_221 | Rep_476_c_221_25 | 33431 | 34723 | - | GH5_7 |
| CAZyme | Rep_476_c_221 | Rep_476_c_221_26 | 34815 | 36098 | - | CE7 |
| TF | Rep_476_c_221 | Rep_476_c_221_27 | 36171 | 37064 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_476_c_221 | Rep_476_c_221_28 | 37364 | 39808 | - | GH2 |
| CAZyme | Rep_476_c_221 | Rep_476_c_221_29 | 40031 | 42517 | + | GH94 |
| TC | Rep_476_c_221 | Rep_476_c_221_30 | 42536 | 43540 | + | 8.A.5.1.3 |
| CAZyme | Rep_476_c_221 | Rep_476_c_221_31 | 43547 | 45562 | + | GH97 |
Gene ID: Rep_476_c_221_21
Type: TC
Location: 28846 - 30528 (-)
Type: TC
Location: 28846 - 30528 (-)
Gene ID: Rep_476_c_221_22
Type: TC
Location: 30538 - 32112 (-)
Type: TC
Location: 30538 - 32112 (-)
Gene ID: Rep_476_c_221_23
Type:
Location: 32170 - 32283 (-)
Type:
Location: 32170 - 32283 (-)
Gene ID: Rep_476_c_221_24
Type: CAZyme
Location: 32347 - 33318 (-)
Type: CAZyme
Location: 32347 - 33318 (-)
Gene ID: Rep_476_c_221_25
Type: CAZyme
Location: 33431 - 34723 (-)
Type: CAZyme
Location: 33431 - 34723 (-)
Gene ID: Rep_476_c_221_26
Type: CAZyme
Location: 34815 - 36098 (-)
Type: CAZyme
Location: 34815 - 36098 (-)
Gene ID: Rep_476_c_221_27
Type: TF
Location: 36171 - 37064 (-)
Type: TF
Location: 36171 - 37064 (-)
Gene ID: Rep_476_c_221_28
Type: CAZyme
Location: 37364 - 39808 (-)
Type: CAZyme
Location: 37364 - 39808 (-)
Gene ID: Rep_476_c_221_29
Type: CAZyme
Location: 40031 - 42517 (+)
Type: CAZyme
Location: 40031 - 42517 (+)
Gene ID: Rep_476_c_221_30
Type: TC
Location: 42536 - 43540 (+)
Type: TC
Location: 42536 - 43540 (+)
Gene ID: Rep_476_c_221_31
Type: CAZyme
Location: 43547 - 45562 (+)
Type: CAZyme
Location: 43547 - 45562 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.