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Cluster: Rep_476_CGC63

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_476_c_216 Rep_476_c_216_2 3586 6780 + 1.B.14.6.1
pfam Rep_476_c_216 Rep_476_c_216_3 6801 8408 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_476_c_216 Rep_476_c_216_4 8433 9797 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_476_c_216 Rep_476_c_216_5 9874 11253 + GH16_3
CAZyme Rep_476_c_216 Rep_476_c_216_6 11272 12567 + GH158
CAZyme Rep_476_c_216 Rep_476_c_216_7 12579 14822 + GH3
pfam Rep_476_c_216 Rep_476_c_216_8 14919 16208 - Enolase_C | Enolase_N | MR_MLE_C
pfam Rep_476_c_216 Rep_476_c_216_9 16274 16942 - Pentapeptide | Pentapeptide | Pentapeptide | Pentapeptide_4 | Pentapeptide_4
TC Rep_476_c_216 Rep_476_c_216_10 16956 17333 - 1.A.43.1.1
pfam Rep_476_c_216 Rep_476_c_216_11 18059 18544 + HU-HIG
CAZyme Rep_476_c_216 Rep_476_c_216_12 18772 20925 + GH97
Gene ID: Rep_476_c_216_2
Type: TC
Location: 3586 - 6780 (+)
Gene ID: Rep_476_c_216_3
Type: pfam
Location: 6801 - 8408 (+)
Gene ID: Rep_476_c_216_4
Type:
Location: 8433 - 9797 (+)
Gene ID: Rep_476_c_216_5
Type: CAZyme
Location: 9874 - 11253 (+)
Gene ID: Rep_476_c_216_6
Type: CAZyme
Location: 11272 - 12567 (+)
Gene ID: Rep_476_c_216_7
Type: CAZyme
Location: 12579 - 14822 (+)
Gene ID: Rep_476_c_216_8
Type: pfam
Location: 14919 - 16208 (-)
Gene ID: Rep_476_c_216_9
Type: pfam
Location: 16274 - 16942 (-)
Gene ID: Rep_476_c_216_10
Type: TC
Location: 16956 - 17333 (-)
Gene ID: Rep_476_c_216_11
Type: pfam
Location: 18059 - 18544 (+)
Gene ID: Rep_476_c_216_12
Type: CAZyme
Location: 18772 - 20925 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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