Genome Details
Selected Rep_genome_ID: Rep_2185
Total Genomes Found: 60
Total Genomes Found: 60
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp900317585
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG131_86 | 3,136,271 | 99.52% | 0.97% | NA | Africa | H3AfricaPhase2 |
| C49.CMAG_6 | 3,205,578 | 99.52% | 0.48% | China(Inner Mongolia) | Asia | IMGG |
| CGMR048370 | 2,647,364 | 99.28% | 0% | China | Asia | CGMR |
| GCA_021615795.1_ASM2161579v1_genomic | 2,519,168 | 97.85% | 0.98% | NA | Africa | H3AfricaPhase1 |
| GCA_021618725.1_ASM2161872v1_genomic | 2,324,285 | 94.51% | 1.01% | NA | Africa | H3AfricaPhase1 |
| GCA_021619605.1_ASM2161960v1_genomic | 2,668,060 | 98.61% | 2.27% | NA | Africa | H3AfricaPhase1 |
| GCA_021619845.1_ASM2161984v1_genomic | 2,742,849 | 97.3% | 0.53% | NA | Africa | H3AfricaPhase1 |
| GCA_021621125.1_ASM2162112v1_genomic | 2,122,508 | 92.95% | 0.58% | NA | Africa | H3AfricaPhase1 |
| GCA_021624825.1_ASM2162482v1_genomic | 3,010,507 | 99.28% | 0.97% | NA | Africa | H3AfricaPhase1 |
| GCA_021625605.1_ASM2162560v1_genomic | 2,552,074 | 95.67% | 0.72% | NA | Africa | H3AfricaPhase1 |
| GCA_021626085.1_ASM2162608v1_genomic | 3,061,035 | 99.52% | 1.45% | NA | Africa | H3AfricaPhase1 |
| GCA_021626315.1_ASM2162631v1_genomic | 2,358,676 | 96.38% | 0.74% | NA | Africa | H3AfricaPhase1 |
| GCA_021629465.1_ASM2162946v1_genomic | 2,267,652 | 95.45% | 0.48% | NA | Africa | H3AfricaPhase1 |
| GCA_021631005.1_ASM2163100v1_genomic | 2,418,776 | 91.13% | 0.24% | NA | Africa | H3AfricaPhase1 |
| GCA_021631905.1_ASM2163190v1_genomic | 4,838,825 | 99.28% | 2.91% | NA | Africa | H3AfricaPhase1 |
| GCA_021632665.1_ASM2163266v1_genomic | 3,019,434 | 96.62% | 1.27% | NA | Africa | H3AfricaPhase1 |
| GCA_021635865.1_ASM2163586v1_genomic | 2,207,885 | 91.01% | 1.24% | NA | Africa | H3AfricaPhase1 |
| GCA_021636345.1_ASM2163634v1_genomic | 2,372,177 | 93.03% | 0.97% | NA | Africa | H3AfricaPhase1 |
| GCA_021637245.1_ASM2163724v1_genomic | 2,251,606 | 96.35% | 0.26% | NA | Africa | H3AfricaPhase1 |
| GCA_021637545.1_ASM2163754v1_genomic | 2,484,807 | 93.68% | 1.53% | NA | Africa | H3AfricaPhase1 |
| GCA_021639185.1_ASM2163918v1_genomic | 2,766,611 | 97.18% | 0.58% | NA | Africa | H3AfricaPhase1 |
| Rep_2185 | 3,448,223 | 99.5169% | 0% | NA | NA | WIS |
| SPMP03_bin.110 | 3,242,721 | 97.53% | 2.42% | Singapore | Asia | SPMP |
| SPMP04_bin.33 | 2,860,236 | 97.26% | 0% | Singapore | Asia | SPMP |
| SPMP08_bin.31 | 2,961,628 | 98.39% | 0% | Singapore | Asia | SPMP |
| SPMP105_bin.31 | 2,940,354 | 99.03% | 1.45% | Singapore | Asia | SPMP |
| SPMP107_bin.29 | 2,814,849 | 94.93% | 1.93% | Singapore | Asia | SPMP |
| SPMP108_bin.13 | 2,904,521 | 95.17% | 0.97% | Singapore | Asia | SPMP |
| SPMP13_bin.106 | 2,892,589 | 97.34% | 1.26% | Singapore | Asia | SPMP |
| SPMP14_bin.61 | 2,498,963 | 91.55% | 0.97% | Singapore | Asia | SPMP |
| SPMP20_bin.82 | 3,302,129 | 98.9% | 2.26% | Singapore | Asia | SPMP |
| SPMP23_bin.11 | 2,913,151 | 95.78% | 2.56% | Singapore | Asia | SPMP |
| SPMP25_bin.82 | 2,714,611 | 94.48% | 1.21% | Singapore | Asia | SPMP |
| SPMP28_bin.79 | 2,563,140 | 98.55% | 1.29% | Singapore | Asia | SPMP |
| SPMP30_bin.134 | 2,663,597 | 92.6% | 1.69% | Singapore | Asia | SPMP |
| SPMP31_bin.99 | 3,020,765 | 95.17% | 2.46% | Singapore | Asia | SPMP |
| SPMP36_bin.2 | 2,979,504 | 91.84% | 0.48% | Singapore | Asia | SPMP |
| SPMP37_bin.47 | 3,072,841 | 97.34% | 0% | Singapore | Asia | SPMP |
| SPMP39_bin.24 | 2,784,021 | 95.49% | 0% | Singapore | Asia | SPMP |
| SPMP41_bin.10 | 3,183,808 | 91.93% | 2.07% | Singapore | Asia | SPMP |
| SPMP43_bin.79 | 2,813,278 | 98.51% | 1.69% | Singapore | Asia | SPMP |
| SPMP45_bin.36 | 3,078,534 | 98.54% | 2.9% | Singapore | Asia | SPMP |
| SPMP49_bin.12 | 2,861,897 | 96.98% | 0.24% | Singapore | Asia | SPMP |
| SPMP51_bin.137 | 3,081,141 | 94.43% | 3.99% | Singapore | Asia | SPMP |
| SPMP53_bin.90 | 3,057,241 | 94.85% | 0.97% | Singapore | Asia | SPMP |
| SPMP55_bin.59 | 3,323,879 | 98.15% | 0.97% | Singapore | Asia | SPMP |
| SPMP57_bin.50 | 3,156,911 | 93.96% | 0.72% | Singapore | Asia | SPMP |
| SPMP65_bin.8 | 3,491,476 | 97.31% | 1.18% | Singapore | Asia | SPMP |
| SPMP71_bin.36 | 2,148,936 | 90.78% | 2.25% | Singapore | Asia | SPMP |
| SPMP74_bin.86 | 2,238,263 | 96.43% | 2.33% | Singapore | Asia | SPMP |
| SPMP78_bin.60 | 2,936,248 | 97% | 0% | Singapore | Asia | SPMP |
| SPMP79_bin.71 | 2,989,502 | 94.59% | 0.24% | Singapore | Asia | SPMP |
| SPMP81_bin.44 | 2,522,390 | 91.63% | 2.42% | Singapore | Asia | SPMP |
| SPMP82_bin.29 | 3,182,806 | 96.94% | 4.35% | Singapore | Asia | SPMP |
| SPMP84_bin.66 | 2,886,990 | 97.22% | 0% | Singapore | Asia | SPMP |
| SPMP88_bin.17 | 3,001,120 | 98.07% | 0.97% | Singapore | Asia | SPMP |
| SPMP92_bin.10 | 3,307,901 | 97.5% | 1.93% | Singapore | Asia | SPMP |
| SPMP93_bin.48 | 2,736,563 | 98.45% | 0% | Singapore | Asia | SPMP |
| SPMP97_bin.118 | 2,815,946 | 97.33% | 0.97% | Singapore | Asia | SPMP |
| SW041_bin.43 | 2,940,097 | 99.52% | 0% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_2185_CGC1 | CGCFAM_00006 | Yes | 7 | 4 | |
| Rep_2185_CGC14 | CGCFAM_00106 | Yes | 14 | 4 | alpha-glucan |
| Rep_2185_CGC20 | CGCFAM_00224 | Yes | 16 | 5 | |
| Rep_2185_CGC34 | CGCFAM_00270 | Yes | 11 | 1 | |
| Rep_2185_CGC33 | CGCFAM_00334 | Yes | 4 | 1 | |
| Rep_2185_CGC38 | CGCFAM_00463 | Yes | 15 | 5 | |
| Rep_2185_CGC27 | CGCFAM_03410 | Yes | 4 | 1 | |
| Rep_2185_CGC5 | CGCFAM_04034 | Yes | 5 | 1 | |
| Rep_2185_CGC13 | CGCFAM_04280 | Yes | 24 | 4 | |
| Rep_2185_CGC36 | CGCFAM_06091 | Yes | 13 | 1 | |
| Rep_2185_CGC12 | CGCFAM_06403 | Yes | 16 | 1 | |
| Rep_2185_CGC31 | CGCFAM_09944 | Yes | 7 | 1 | |
| Rep_2185_CGC21 | CGCFAM_09945 | Yes | 13 | 1 | |
| Rep_2185_CGC37 | CGCFAM_10800 | Yes | 8 | 3 |
Top CAZyme Families