Cluster: Rep_2185_CGC14
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: Rep_2185
- CGC Family ID: CGCFAM_00106
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2185_c_0 | Rep_2185_c_0_1377 | 1425383 | 1427233 | + | 3.A.16.1.1 |
| NULL(UNKNOWN) | Rep_2185_c_0 | Rep_2185_c_0_1378 | 1427797 | 1429932 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_2185_c_0 | Rep_2185_c_0_1379 | 1429967 | 1430980 | - | LacI |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1380 | 1431235 | 1432737 | + | GH77 |
| STP | Rep_2185_c_0 | Rep_2185_c_0_1381 | 1432813 | 1434081 | + | SBP_bac_1 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1382 | 1434184 | 1435563 | + | 3.A.1.1.27 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1383 | 1435563 | 1436450 | + | 3.A.1.1.27 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1384 | 1436831 | 1438525 | + | GH13_36 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1385 | 1438716 | 1440002 | + | GH53 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1386 | 1440021 | 1440932 | + | 3.A.1.1.29 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1387 | 1440943 | 1441830 | + | 3.A.1.1.29 |
| STP | Rep_2185_c_0 | Rep_2185_c_0_1388 | 1441868 | 1443451 | + | SBP_bac_1 |
| TF | Rep_2185_c_0 | Rep_2185_c_0_1389 | 1443470 | 1444471 | + | LacI |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1390 | 1444490 | 1445539 | + | GH53 |
Gene ID: Rep_2185_c_0_1377
Type: TC
Location: 1425383 - 1427233 (+)
Type: TC
Location: 1425383 - 1427233 (+)
Gene ID: Rep_2185_c_0_1378
Type:
Location: 1427797 - 1429932 (-)
Type:
Location: 1427797 - 1429932 (-)
Gene ID: Rep_2185_c_0_1379
Type: TF
Location: 1429967 - 1430980 (-)
Type: TF
Location: 1429967 - 1430980 (-)
Gene ID: Rep_2185_c_0_1380
Type: CAZyme
Location: 1431235 - 1432737 (+)
Type: CAZyme
Location: 1431235 - 1432737 (+)
Gene ID: Rep_2185_c_0_1381
Type: STP
Location: 1432813 - 1434081 (+)
Type: STP
Location: 1432813 - 1434081 (+)
Gene ID: Rep_2185_c_0_1382
Type: TC
Location: 1434184 - 1435563 (+)
Type: TC
Location: 1434184 - 1435563 (+)
Gene ID: Rep_2185_c_0_1383
Type: TC
Location: 1435563 - 1436450 (+)
Type: TC
Location: 1435563 - 1436450 (+)
Gene ID: Rep_2185_c_0_1384
Type: CAZyme
Location: 1436831 - 1438525 (+)
Type: CAZyme
Location: 1436831 - 1438525 (+)
Gene ID: Rep_2185_c_0_1385
Type: CAZyme
Location: 1438716 - 1440002 (+)
Type: CAZyme
Location: 1438716 - 1440002 (+)
Gene ID: Rep_2185_c_0_1386
Type: TC
Location: 1440021 - 1440932 (+)
Type: TC
Location: 1440021 - 1440932 (+)
Gene ID: Rep_2185_c_0_1387
Type: TC
Location: 1440943 - 1441830 (+)
Type: TC
Location: 1440943 - 1441830 (+)
Gene ID: Rep_2185_c_0_1388
Type: STP
Location: 1441868 - 1443451 (+)
Type: STP
Location: 1441868 - 1443451 (+)
Gene ID: Rep_2185_c_0_1389
Type: TF
Location: 1443470 - 1444471 (+)
Type: TF
Location: 1443470 - 1444471 (+)
Gene ID: Rep_2185_c_0_1390
Type: CAZyme
Location: 1444490 - 1445539 (+)
Type: CAZyme
Location: 1444490 - 1445539 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter rectalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.