Cluster: Rep_2185_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2185
- CGC Family ID: CGCFAM_00006
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_6 | 8979 | 9923 | - | GT2 |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_7 | 9929 | 10459 | - | Hexapep | Hexapep_2 | Hexapep_2 |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_8 | 10437 | 11846 | - | Wzy_C |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_9 | 11887 | 12996 | - | GT4 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_10 | 13013 | 13969 | - | GT2 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_11 | 13966 | 14724 | - | GT111 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_12 | 14727 | 15536 | - | 9.B.18.1.2 |
Gene ID: Rep_2185_c_0_6
Type: CAZyme
Location: 8979 - 9923 (-)
Type: CAZyme
Location: 8979 - 9923 (-)
Gene ID: Rep_2185_c_0_7
Type: pfam
Location: 9929 - 10459 (-)
Type: pfam
Location: 9929 - 10459 (-)
Gene ID: Rep_2185_c_0_8
Type: pfam
Location: 10437 - 11846 (-)
Type: pfam
Location: 10437 - 11846 (-)
Gene ID: Rep_2185_c_0_9
Type: CAZyme
Location: 11887 - 12996 (-)
Type: CAZyme
Location: 11887 - 12996 (-)
Gene ID: Rep_2185_c_0_10
Type: CAZyme
Location: 13013 - 13969 (-)
Type: CAZyme
Location: 13013 - 13969 (-)
Gene ID: Rep_2185_c_0_11
Type: CAZyme
Location: 13966 - 14724 (-)
Type: CAZyme
Location: 13966 - 14724 (-)
Gene ID: Rep_2185_c_0_12
Type: TC
Location: 14727 - 15536 (-)
Type: TC
Location: 14727 - 15536 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter rectalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2185_c_0_12 | vegetarian > vegan | 2.70915 | 0.00557 |