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Cluster: Rep_2185_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2185_c_0 Rep_2185_c_0_2791 2955959 2956867 - 3.A.1.149.1
TF Rep_2185_c_0 Rep_2185_c_0_2792 2956897 2957268 - GntR
TF Rep_2185_c_0 Rep_2185_c_0_2793 2957680 2958219 + HTH_3
TC Rep_2185_c_0 Rep_2185_c_0_2794 2958348 2959421 + 3.A.1.11.8
TC Rep_2185_c_0 Rep_2185_c_0_2795 2959414 2960238 + 3.A.1.11.8
TC Rep_2185_c_0 Rep_2185_c_0_2796 2960232 2962106 + 3.A.1.11.7
pfam Rep_2185_c_0 Rep_2185_c_0_2797 2962285 2963178 + DUF5688
CAZyme Rep_2185_c_0 Rep_2185_c_0_2798 2963323 2964774 - GT5
STP Rep_2185_c_0 Rep_2185_c_0_2799 2964943 2965491 - Spo0A_C
TC Rep_2185_c_0 Rep_2185_c_0_2800 2965655 2967508 - 3.A.1.135.6
TC Rep_2185_c_0 Rep_2185_c_0_2801 2967510 2969687 - 3.A.1.135.6
Gene ID: Rep_2185_c_0_2791
Type: TC
Location: 2955959 - 2956867 (-)
Gene ID: Rep_2185_c_0_2792
Type: TF
Location: 2956897 - 2957268 (-)
Gene ID: Rep_2185_c_0_2793
Type: TF
Location: 2957680 - 2958219 (+)
Gene ID: Rep_2185_c_0_2794
Type: TC
Location: 2958348 - 2959421 (+)
Gene ID: Rep_2185_c_0_2795
Type: TC
Location: 2959414 - 2960238 (+)
Gene ID: Rep_2185_c_0_2796
Type: TC
Location: 2960232 - 2962106 (+)
Gene ID: Rep_2185_c_0_2797
Type: pfam
Location: 2962285 - 2963178 (+)
Gene ID: Rep_2185_c_0_2798
Type: CAZyme
Location: 2963323 - 2964774 (-)
Gene ID: Rep_2185_c_0_2799
Type: STP
Location: 2964943 - 2965491 (-)
Gene ID: Rep_2185_c_0_2800
Type: TC
Location: 2965655 - 2967508 (-)
Gene ID: Rep_2185_c_0_2801
Type: TC
Location: 2967510 - 2969687 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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