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Cluster: Rep_2185_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2185_c_0 Rep_2185_c_0_1080 1108142 1109530 + 3.A.1.1.45
TC Rep_2185_c_0 Rep_2185_c_0_1081 1109618 1110475 + 3.A.1.1.45
TC Rep_2185_c_0 Rep_2185_c_0_1082 1110475 1111386 + 3.A.1.1.45
TF Rep_2185_c_0 Rep_2185_c_0_1083 1111568 1112572 + LacI
TC Rep_2185_c_0 Rep_2185_c_0_1084 1112633 1113799 + 2.A.86.1.8
TC Rep_2185_c_0 Rep_2185_c_0_1085 1113989 1115332 + 2.A.66.1.33
NULL(UNKNOWN) Rep_2185_c_0 Rep_2185_c_0_1086 1115416 1117035 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_2185_c_0 Rep_2185_c_0_1087 1117063 1118088 - LacI
TC Rep_2185_c_0 Rep_2185_c_0_1088 1118324 1119238 + 3.A.1.1.10
TC Rep_2185_c_0 Rep_2185_c_0_1089 1119251 1120153 + 3.A.1.1.29
NULL(UNKNOWN) Rep_2185_c_0 Rep_2185_c_0_1090 1120168 1121862 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2185_c_0 Rep_2185_c_0_1091 1121918 1123381 + GH32
STP Rep_2185_c_0 Rep_2185_c_0_1092 1123504 1124451 + PfkB
pfam Rep_2185_c_0 Rep_2185_c_0_1093 1124606 1126303 + PDDEXK_9 | AAA-ATPase_like
TC Rep_2185_c_0 Rep_2185_c_0_1094 1126304 1128442 + 2.A.53.4.1
TC Rep_2185_c_0 Rep_2185_c_0_1095 1128439 1130412 + 2.A.16.2.2
Gene ID: Rep_2185_c_0_1080
Type: TC
Location: 1108142 - 1109530 (+)
Gene ID: Rep_2185_c_0_1081
Type: TC
Location: 1109618 - 1110475 (+)
Gene ID: Rep_2185_c_0_1082
Type: TC
Location: 1110475 - 1111386 (+)
Gene ID: Rep_2185_c_0_1083
Type: TF
Location: 1111568 - 1112572 (+)
Gene ID: Rep_2185_c_0_1084
Type: TC
Location: 1112633 - 1113799 (+)
Gene ID: Rep_2185_c_0_1085
Type: TC
Location: 1113989 - 1115332 (+)
Gene ID: Rep_2185_c_0_1086
Type:
Location: 1115416 - 1117035 (+)
Gene ID: Rep_2185_c_0_1087
Type: TF
Location: 1117063 - 1118088 (-)
Gene ID: Rep_2185_c_0_1088
Type: TC
Location: 1118324 - 1119238 (+)
Gene ID: Rep_2185_c_0_1089
Type: TC
Location: 1119251 - 1120153 (+)
Gene ID: Rep_2185_c_0_1090
Type:
Location: 1120168 - 1121862 (+)
Gene ID: Rep_2185_c_0_1091
Type: CAZyme
Location: 1121918 - 1123381 (+)
Gene ID: Rep_2185_c_0_1092
Type: STP
Location: 1123504 - 1124451 (+)
Gene ID: Rep_2185_c_0_1093
Type: pfam
Location: 1124606 - 1126303 (+)
Gene ID: Rep_2185_c_0_1094
Type: TC
Location: 1126304 - 1128442 (+)
Gene ID: Rep_2185_c_0_1095
Type: TC
Location: 1128439 - 1130412 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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