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Cluster: Rep_2185_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2185_c_0 Rep_2185_c_0_2743 2903666 2904451 - 3.A.1.3.14
TC Rep_2185_c_0 Rep_2185_c_0_2744 2904461 2905117 - 3.A.1.3.14
TC Rep_2185_c_0 Rep_2185_c_0_2745 2905119 2905925 - 3.A.1.3.10
pfam Rep_2185_c_0 Rep_2185_c_0_2746 2906066 2907010 - Mem_trans
CAZyme Rep_2185_c_0 Rep_2185_c_0_2747 2907190 2908317 + GT28
pfam Rep_2185_c_0 Rep_2185_c_0_2748 2908358 2908960 + G3P_acyltransf
TC Rep_2185_c_0 Rep_2185_c_0_2749 2908980 2910035 - 9.B.34.1.2
Gene ID: Rep_2185_c_0_2743
Type: TC
Location: 2903666 - 2904451 (-)
Gene ID: Rep_2185_c_0_2744
Type: TC
Location: 2904461 - 2905117 (-)
Gene ID: Rep_2185_c_0_2745
Type: TC
Location: 2905119 - 2905925 (-)
Gene ID: Rep_2185_c_0_2746
Type: pfam
Location: 2906066 - 2907010 (-)
Gene ID: Rep_2185_c_0_2747
Type: CAZyme
Location: 2907190 - 2908317 (+)
Gene ID: Rep_2185_c_0_2748
Type: pfam
Location: 2908358 - 2908960 (+)
Gene ID: Rep_2185_c_0_2749
Type: TC
Location: 2908980 - 2910035 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2185_c_0_2744 vegetarian > omnivore 1.07493 0.00441
Rep_2185_c_0_2744 vegetarian > vegan 1.01160 0.00557
Rep_2185_c_0_2749 vegan > omnivore 1.33757 0.00560

🧭 Explore Read Mapping of CGC

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