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Cluster: Rep_2185_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2185_c_0 Rep_2185_c_0_1332 1368554 1370062 + 3.A.1.2.3
TC Rep_2185_c_0 Rep_2185_c_0_1333 1370081 1371730 + 3.A.1.2.3
TF Rep_2185_c_0 Rep_2185_c_0_1334 1371989 1373593 + HTH_AraC | HTH_AraC
TC Rep_2185_c_0 Rep_2185_c_0_1335 1373574 1375367 + 9.B.33.1.1
STP Rep_2185_c_0 Rep_2185_c_0_1336 1375364 1376419 + Peripla_BP_1
TC Rep_2185_c_0 Rep_2185_c_0_1337 1376434 1377474 + 3.A.1.2.3
TF Rep_2185_c_0 Rep_2185_c_0_1338 1377477 1378319 - HTH_AraC | HTH_AraC
TC Rep_2185_c_0 Rep_2185_c_0_1339 1378508 1379809 + 3.A.1.1.28
TC Rep_2185_c_0 Rep_2185_c_0_1340 1379806 1380681 + 3.A.1.1.45
TC Rep_2185_c_0 Rep_2185_c_0_1341 1380681 1381517 + 3.A.1.1.28
CAZyme Rep_2185_c_0 Rep_2185_c_0_1342 1381557 1384397 + GH36
CAZyme Rep_2185_c_0 Rep_2185_c_0_1343 1384387 1385862 + GH13_18
pfam Rep_2185_c_0 Rep_2185_c_0_1344 1386183 1387982 - AAA_14
pfam Rep_2185_c_0 Rep_2185_c_0_1345 1388255 1388749 + UDG
TC Rep_2185_c_0 Rep_2185_c_0_1346 1388779 1390128 + 2.A.66.1.28
TF Rep_2185_c_0 Rep_2185_c_0_1347 1390181 1391206 - LacI
TC Rep_2185_c_0 Rep_2185_c_0_1348 1391597 1392958 + 3.A.1.1.41
TC Rep_2185_c_0 Rep_2185_c_0_1349 1392989 1393867 + 3.A.1.1.11
TC Rep_2185_c_0 Rep_2185_c_0_1350 1393880 1394701 + 3.A.1.1.34
CAZyme Rep_2185_c_0 Rep_2185_c_0_1351 1394729 1397122 + GH31_15
CAZyme Rep_2185_c_0 Rep_2185_c_0_1352 1397264 1399510 + GH31_1
pfam Rep_2185_c_0 Rep_2185_c_0_1353 1399529 1400284 - Exo_endo_phos
pfam Rep_2185_c_0 Rep_2185_c_0_1354 1400341 1401669 - AAA_14 | DUF4143
TC Rep_2185_c_0 Rep_2185_c_0_1355 1402094 1403491 - 2.A.66.1.32
Gene ID: Rep_2185_c_0_1332
Type: TC
Location: 1368554 - 1370062 (+)
Gene ID: Rep_2185_c_0_1333
Type: TC
Location: 1370081 - 1371730 (+)
Gene ID: Rep_2185_c_0_1334
Type: TF
Location: 1371989 - 1373593 (+)
Gene ID: Rep_2185_c_0_1335
Type: TC
Location: 1373574 - 1375367 (+)
Gene ID: Rep_2185_c_0_1336
Type: STP
Location: 1375364 - 1376419 (+)
Gene ID: Rep_2185_c_0_1337
Type: TC
Location: 1376434 - 1377474 (+)
Gene ID: Rep_2185_c_0_1338
Type: TF
Location: 1377477 - 1378319 (-)
Gene ID: Rep_2185_c_0_1339
Type: TC
Location: 1378508 - 1379809 (+)
Gene ID: Rep_2185_c_0_1340
Type: TC
Location: 1379806 - 1380681 (+)
Gene ID: Rep_2185_c_0_1341
Type: TC
Location: 1380681 - 1381517 (+)
Gene ID: Rep_2185_c_0_1342
Type: CAZyme
Location: 1381557 - 1384397 (+)
Gene ID: Rep_2185_c_0_1343
Type: CAZyme
Location: 1384387 - 1385862 (+)
Gene ID: Rep_2185_c_0_1344
Type: pfam
Location: 1386183 - 1387982 (-)
Gene ID: Rep_2185_c_0_1345
Type: pfam
Location: 1388255 - 1388749 (+)
Gene ID: Rep_2185_c_0_1346
Type: TC
Location: 1388779 - 1390128 (+)
Gene ID: Rep_2185_c_0_1347
Type: TF
Location: 1390181 - 1391206 (-)
Gene ID: Rep_2185_c_0_1348
Type: TC
Location: 1391597 - 1392958 (+)
Gene ID: Rep_2185_c_0_1349
Type: TC
Location: 1392989 - 1393867 (+)
Gene ID: Rep_2185_c_0_1350
Type: TC
Location: 1393880 - 1394701 (+)
Gene ID: Rep_2185_c_0_1351
Type: CAZyme
Location: 1394729 - 1397122 (+)
Gene ID: Rep_2185_c_0_1352
Type: CAZyme
Location: 1397264 - 1399510 (+)
Gene ID: Rep_2185_c_0_1353
Type: pfam
Location: 1399529 - 1400284 (-)
Gene ID: Rep_2185_c_0_1354
Type: pfam
Location: 1400341 - 1401669 (-)
Gene ID: Rep_2185_c_0_1355
Type: TC
Location: 1402094 - 1403491 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2185_c_0_1339 vegan > omnivore 1.02888 0.00290
Rep_2185_c_0_1340 vegan > omnivore 1.16138 0.00290
Rep_2185_c_0_1341 vegan > omnivore 1.31019 0.00290
Rep_2185_c_0_1353 vegetarian > vegan 1.12842 0.00557

🧭 Explore Read Mapping of CGC

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