Cluster: Rep_2185_CGC20
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_2185
- CGC Family ID: CGCFAM_00224
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2185_c_0 | Rep_2185_c_0_1730 | 1808687 | 1810312 | + | 3.A.1.1.29 |
| NULL(UNKNOWN) | Rep_2185_c_0 | Rep_2185_c_0_1731 | 1810410 | 1810658 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1732 | 1810905 | 1812047 | + | GH8 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1733 | 1812207 | 1813955 | + | CE17 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1734 | 1813975 | 1815546 | + | CBM91 | GH43_12 |
| TF | Rep_2185_c_0 | Rep_2185_c_0_1735 | 1815536 | 1816393 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1736 | 1816552 | 1818696 | + | GH3 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1737 | 1818793 | 1820559 | + | 8.A.59.2.1 |
| TF | Rep_2185_c_0 | Rep_2185_c_0_1738 | 1820570 | 1822165 | + | HTH_AraC | HTH_AraC |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1739 | 1822305 | 1823969 | + | 3.A.1.1.29 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1740 | 1824043 | 1824999 | + | 3.A.1.1.29 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1741 | 1825014 | 1825922 | + | 3.A.1.1.29 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1742 | 1826120 | 1827619 | + | 1.B.52.2.1 |
| NULL(UNKNOWN) | Rep_2185_c_0 | Rep_2185_c_0_1743 | 1827778 | 1828626 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_1744 | 1829094 | 1832261 | + | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | DUF5915 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1745 | 1832320 | 1834788 | + | GT35 |
Gene ID: Rep_2185_c_0_1730
Type: TC
Location: 1808687 - 1810312 (+)
Type: TC
Location: 1808687 - 1810312 (+)
Gene ID: Rep_2185_c_0_1731
Type:
Location: 1810410 - 1810658 (+)
Type:
Location: 1810410 - 1810658 (+)
Gene ID: Rep_2185_c_0_1732
Type: CAZyme
Location: 1810905 - 1812047 (+)
Type: CAZyme
Location: 1810905 - 1812047 (+)
Gene ID: Rep_2185_c_0_1733
Type: CAZyme
Location: 1812207 - 1813955 (+)
Type: CAZyme
Location: 1812207 - 1813955 (+)
Gene ID: Rep_2185_c_0_1734
Type: CAZyme
Location: 1813975 - 1815546 (+)
Type: CAZyme
Location: 1813975 - 1815546 (+)
Gene ID: Rep_2185_c_0_1735
Type: TF
Location: 1815536 - 1816393 (-)
Type: TF
Location: 1815536 - 1816393 (-)
Gene ID: Rep_2185_c_0_1736
Type: CAZyme
Location: 1816552 - 1818696 (+)
Type: CAZyme
Location: 1816552 - 1818696 (+)
Gene ID: Rep_2185_c_0_1737
Type: TC
Location: 1818793 - 1820559 (+)
Type: TC
Location: 1818793 - 1820559 (+)
Gene ID: Rep_2185_c_0_1738
Type: TF
Location: 1820570 - 1822165 (+)
Type: TF
Location: 1820570 - 1822165 (+)
Gene ID: Rep_2185_c_0_1739
Type: TC
Location: 1822305 - 1823969 (+)
Type: TC
Location: 1822305 - 1823969 (+)
Gene ID: Rep_2185_c_0_1740
Type: TC
Location: 1824043 - 1824999 (+)
Type: TC
Location: 1824043 - 1824999 (+)
Gene ID: Rep_2185_c_0_1741
Type: TC
Location: 1825014 - 1825922 (+)
Type: TC
Location: 1825014 - 1825922 (+)
Gene ID: Rep_2185_c_0_1742
Type: TC
Location: 1826120 - 1827619 (+)
Type: TC
Location: 1826120 - 1827619 (+)
Gene ID: Rep_2185_c_0_1743
Type:
Location: 1827778 - 1828626 (+)
Type:
Location: 1827778 - 1828626 (+)
Gene ID: Rep_2185_c_0_1744
Type: pfam
Location: 1829094 - 1832261 (+)
Type: pfam
Location: 1829094 - 1832261 (+)
Gene ID: Rep_2185_c_0_1745
Type: CAZyme
Location: 1832320 - 1834788 (+)
Type: CAZyme
Location: 1832320 - 1834788 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter rectalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2185_c_0_1744 | vegan > omnivore | 1.21351 | 0.00560 |