Cluster: Rep_2185_CGC38
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_2185
- CGC Family ID: CGCFAM_00463
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2185_c_0 | Rep_2185_c_0_3096 | 3316437 | 3319253 | - | 8.A.59.4.2 |
| NULL(UNKNOWN) | Rep_2185_c_0 | Rep_2185_c_0_3097 | 3319334 | 3319876 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_2185_c_0 | Rep_2185_c_0_3098 | 3319911 | 3321284 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_3099 | 3321263 | 3322753 | - | GT4 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_3100 | 3322799 | 3325048 | - | 3.A.5.10.1 |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_3101 | 3325119 | 3325655 | - | Sec-ASP3 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_3102 | 3325745 | 3327259 | - | 3.A.5.10.1 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_3103 | 3327252 | 3328913 | - | 3.A.5.10.1 |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_3104 | 3328952 | 3330184 | - | SecY |
| NULL(UNKNOWN) | Rep_2185_c_0 | Rep_2185_c_0_3105 | 3330728 | 3333430 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_3106 | 3334450 | 3335361 | - | GT113 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_3107 | 3335462 | 3336499 | - | GT113 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_3108 | 3336610 | 3338169 | - | GT4 |
| NULL(UNKNOWN) | Rep_2185_c_0 | Rep_2185_c_0_3109 | 3338156 | 3339430 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_3110 | 3339427 | 3341598 | - | GT2 | GT8 |
Gene ID: Rep_2185_c_0_3096
Type: TC
Location: 3316437 - 3319253 (-)
Type: TC
Location: 3316437 - 3319253 (-)
Gene ID: Rep_2185_c_0_3097
Type:
Location: 3319334 - 3319876 (-)
Type:
Location: 3319334 - 3319876 (-)
Gene ID: Rep_2185_c_0_3098
Type:
Location: 3319911 - 3321284 (-)
Type:
Location: 3319911 - 3321284 (-)
Gene ID: Rep_2185_c_0_3099
Type: CAZyme
Location: 3321263 - 3322753 (-)
Type: CAZyme
Location: 3321263 - 3322753 (-)
Gene ID: Rep_2185_c_0_3100
Type: TC
Location: 3322799 - 3325048 (-)
Type: TC
Location: 3322799 - 3325048 (-)
Gene ID: Rep_2185_c_0_3101
Type: pfam
Location: 3325119 - 3325655 (-)
Type: pfam
Location: 3325119 - 3325655 (-)
Gene ID: Rep_2185_c_0_3102
Type: TC
Location: 3325745 - 3327259 (-)
Type: TC
Location: 3325745 - 3327259 (-)
Gene ID: Rep_2185_c_0_3103
Type: TC
Location: 3327252 - 3328913 (-)
Type: TC
Location: 3327252 - 3328913 (-)
Gene ID: Rep_2185_c_0_3104
Type: pfam
Location: 3328952 - 3330184 (-)
Type: pfam
Location: 3328952 - 3330184 (-)
Gene ID: Rep_2185_c_0_3105
Type:
Location: 3330728 - 3333430 (+)
Type:
Location: 3330728 - 3333430 (+)
Gene ID: Rep_2185_c_0_3106
Type: CAZyme
Location: 3334450 - 3335361 (-)
Type: CAZyme
Location: 3334450 - 3335361 (-)
Gene ID: Rep_2185_c_0_3107
Type: CAZyme
Location: 3335462 - 3336499 (-)
Type: CAZyme
Location: 3335462 - 3336499 (-)
Gene ID: Rep_2185_c_0_3108
Type: CAZyme
Location: 3336610 - 3338169 (-)
Type: CAZyme
Location: 3336610 - 3338169 (-)
Gene ID: Rep_2185_c_0_3109
Type:
Location: 3338156 - 3339430 (-)
Type:
Location: 3338156 - 3339430 (-)
Gene ID: Rep_2185_c_0_3110
Type: CAZyme
Location: 3339427 - 3341598 (-)
Type: CAZyme
Location: 3339427 - 3341598 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter rectalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.