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Cluster: Rep_2185_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2185_c_0 Rep_2185_c_0_3055 3268981 3270990 + GH42
pfam Rep_2185_c_0 Rep_2185_c_0_3056 3271080 3272744 - PDDEXK_9 | AAA-ATPase_like
pfam Rep_2185_c_0 Rep_2185_c_0_3057 3272924 3274420 - AraA_N | Arabinose_Iso_C | AraA_central
CAZyme Rep_2185_c_0 Rep_2185_c_0_3058 3274589 3276514 - GH127
pfam Rep_2185_c_0 Rep_2185_c_0_3059 3276582 3277235 - DUF624
CAZyme Rep_2185_c_0 Rep_2185_c_0_3060 3277320 3278840 - GH51_1
TC Rep_2185_c_0 Rep_2185_c_0_3061 3278883 3279764 - 3.A.1.1.34
TC Rep_2185_c_0 Rep_2185_c_0_3062 3279768 3280664 - 3.A.1.1.34
Gene ID: Rep_2185_c_0_3055
Type: CAZyme
Location: 3268981 - 3270990 (+)
Gene ID: Rep_2185_c_0_3056
Type: pfam
Location: 3271080 - 3272744 (-)
Gene ID: Rep_2185_c_0_3057
Type: pfam
Location: 3272924 - 3274420 (-)
Gene ID: Rep_2185_c_0_3058
Type: CAZyme
Location: 3274589 - 3276514 (-)
Gene ID: Rep_2185_c_0_3059
Type: pfam
Location: 3276582 - 3277235 (-)
Gene ID: Rep_2185_c_0_3060
Type: CAZyme
Location: 3277320 - 3278840 (-)
Gene ID: Rep_2185_c_0_3061
Type: TC
Location: 3278883 - 3279764 (-)
Gene ID: Rep_2185_c_0_3062
Type: TC
Location: 3279768 - 3280664 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2185_c_0_3057 vegetarian > omnivore 1.39229 0.00441

🧭 Explore Read Mapping of CGC

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