Cluster: Rep_2185_CGC36
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2185
- CGC Family ID: CGCFAM_06091
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_2979 | 3195362 | 3196831 | - | CE4 |
| STP | Rep_2185_c_0 | Rep_2185_c_0_2980 | 3197184 | 3198641 | - | Fer4 | Fer4 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_2981 | 3198882 | 3200141 | - | 3.A.1.122.2 |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_2982 | 3200162 | 3201727 | - | Biotin_lipoyl_2 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_2983 | 3201705 | 3202409 | - | 3.A.1.122.2 |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_2984 | 3202410 | 3203759 | - | Biotin_lipoyl_2 |
| peptidase | Rep_2185_c_0 | Rep_2185_c_0_2985 | 3203879 | 3205681 | + | S08.UPA |
| TC | Rep_2185_c_0 | Rep_2185_c_0_2986 | 3206002 | 3206937 | - | 2.A.19.5.2 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_2987 | 3207285 | 3208736 | + | 2.A.21.2.5 |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_2988 | 3208934 | 3211141 | - | Gly_radical | ATP-cone | NRDD |
| TF | Rep_2185_c_0 | Rep_2185_c_0_2989 | 3211527 | 3211979 | - | MarR |
| TC | Rep_2185_c_0 | Rep_2185_c_0_2990 | 3212149 | 3213897 | + | 3.A.1.135.5 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_2991 | 3213897 | 3215789 | + | 3.A.1.135.5 |
Gene ID: Rep_2185_c_0_2979
Type: CAZyme
Location: 3195362 - 3196831 (-)
Type: CAZyme
Location: 3195362 - 3196831 (-)
Gene ID: Rep_2185_c_0_2980
Type: STP
Location: 3197184 - 3198641 (-)
Type: STP
Location: 3197184 - 3198641 (-)
Gene ID: Rep_2185_c_0_2981
Type: TC
Location: 3198882 - 3200141 (-)
Type: TC
Location: 3198882 - 3200141 (-)
Gene ID: Rep_2185_c_0_2982
Type: pfam
Location: 3200162 - 3201727 (-)
Type: pfam
Location: 3200162 - 3201727 (-)
Gene ID: Rep_2185_c_0_2983
Type: TC
Location: 3201705 - 3202409 (-)
Type: TC
Location: 3201705 - 3202409 (-)
Gene ID: Rep_2185_c_0_2984
Type: pfam
Location: 3202410 - 3203759 (-)
Type: pfam
Location: 3202410 - 3203759 (-)
Gene ID: Rep_2185_c_0_2985
Type: peptidase
Location: 3203879 - 3205681 (+)
Type: peptidase
Location: 3203879 - 3205681 (+)
Gene ID: Rep_2185_c_0_2986
Type: TC
Location: 3206002 - 3206937 (-)
Type: TC
Location: 3206002 - 3206937 (-)
Gene ID: Rep_2185_c_0_2987
Type: TC
Location: 3207285 - 3208736 (+)
Type: TC
Location: 3207285 - 3208736 (+)
Gene ID: Rep_2185_c_0_2988
Type: pfam
Location: 3208934 - 3211141 (-)
Type: pfam
Location: 3208934 - 3211141 (-)
Gene ID: Rep_2185_c_0_2989
Type: TF
Location: 3211527 - 3211979 (-)
Type: TF
Location: 3211527 - 3211979 (-)
Gene ID: Rep_2185_c_0_2990
Type: TC
Location: 3212149 - 3213897 (+)
Type: TC
Location: 3212149 - 3213897 (+)
Gene ID: Rep_2185_c_0_2991
Type: TC
Location: 3213897 - 3215789 (+)
Type: TC
Location: 3213897 - 3215789 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter rectalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.