Cluster: Rep_2185_CGC21
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2185
- CGC Family ID: CGCFAM_09945
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2185_c_0 | Rep_2185_c_0_1753 | 1843649 | 1845550 | + | 3.A.1.120.6 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1754 | 1845561 | 1846004 | - | 2.A.79.1.7 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1755 | 1846008 | 1846775 | - | 2.A.79.1.5 |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_1756 | 1846836 | 1847120 | - | YafQ_toxin |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_1757 | 1847117 | 1847398 | - | RelB |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1758 | 1847568 | 1848197 | + | 9.A.11.1.1 |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_1759 | 1848190 | 1848666 | + | SpoVAB |
| pfam | Rep_2185_c_0 | Rep_2185_c_0_1760 | 1848785 | 1849111 | + | DUF3837 |
| CAZyme | Rep_2185_c_0 | Rep_2185_c_0_1761 | 1849250 | 1851703 | - | GH94 |
| TF | Rep_2185_c_0 | Rep_2185_c_0_1762 | 1852087 | 1853097 | + | LacI |
| NULL(UNKNOWN) | Rep_2185_c_0 | Rep_2185_c_0_1763 | 1853168 | 1854562 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1764 | 1854723 | 1855640 | + | 3.A.1.1.4 |
| TC | Rep_2185_c_0 | Rep_2185_c_0_1765 | 1855647 | 1856510 | + | 3.A.1.1.26 |
Gene ID: Rep_2185_c_0_1753
Type: TC
Location: 1843649 - 1845550 (+)
Type: TC
Location: 1843649 - 1845550 (+)
Gene ID: Rep_2185_c_0_1754
Type: TC
Location: 1845561 - 1846004 (-)
Type: TC
Location: 1845561 - 1846004 (-)
Gene ID: Rep_2185_c_0_1755
Type: TC
Location: 1846008 - 1846775 (-)
Type: TC
Location: 1846008 - 1846775 (-)
Gene ID: Rep_2185_c_0_1756
Type: pfam
Location: 1846836 - 1847120 (-)
Type: pfam
Location: 1846836 - 1847120 (-)
Gene ID: Rep_2185_c_0_1757
Type: pfam
Location: 1847117 - 1847398 (-)
Type: pfam
Location: 1847117 - 1847398 (-)
Gene ID: Rep_2185_c_0_1758
Type: TC
Location: 1847568 - 1848197 (+)
Type: TC
Location: 1847568 - 1848197 (+)
Gene ID: Rep_2185_c_0_1759
Type: pfam
Location: 1848190 - 1848666 (+)
Type: pfam
Location: 1848190 - 1848666 (+)
Gene ID: Rep_2185_c_0_1760
Type: pfam
Location: 1848785 - 1849111 (+)
Type: pfam
Location: 1848785 - 1849111 (+)
Gene ID: Rep_2185_c_0_1761
Type: CAZyme
Location: 1849250 - 1851703 (-)
Type: CAZyme
Location: 1849250 - 1851703 (-)
Gene ID: Rep_2185_c_0_1762
Type: TF
Location: 1852087 - 1853097 (+)
Type: TF
Location: 1852087 - 1853097 (+)
Gene ID: Rep_2185_c_0_1763
Type:
Location: 1853168 - 1854562 (+)
Type:
Location: 1853168 - 1854562 (+)
Gene ID: Rep_2185_c_0_1764
Type: TC
Location: 1854723 - 1855640 (+)
Type: TC
Location: 1854723 - 1855640 (+)
Gene ID: Rep_2185_c_0_1765
Type: TC
Location: 1855647 - 1856510 (+)
Type: TC
Location: 1855647 - 1856510 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter rectalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2185_c_0_1757 | vegan > omnivore | 2.50418 | 0.00560 |
| Rep_2185_c_0_1757 | vegetarian > omnivore | 1.66931 | 0.00441 |
| Rep_2185_c_0_1763 | vegan > omnivore | 1.17415 | 0.00560 |
| Rep_2185_c_0_1764 | vegan > omnivore | 1.05380 | 0.02085 |