Genome Details
Selected Rep_genome_ID: HRGMv2_2293
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3402
Species
UBA3402 sp934418055
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG286_46 | 2,913,392 | 91.77% | 3.69% | NA | Africa | H3AfricaPhase2 |
| CGMR036374 | 2,751,298 | 90.11% | 1.9% | China | Asia | CGMR |
| HRGMv2_2293 | 2,741,459 | 93.02% | 0.632% | Cameroon | Africa | HRGM |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_D_23_2656.10 | 3,037,930 | 90.08% | 2.64% | NA | Africa | Hadza |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2293_CGC11 | CGCFAM_00259 | Yes | 3 | 1 | |
| HRGMv2_2293_CGC26 | CGCFAM_00259 | Yes | 4 | 2 | |
| HRGMv2_2293_CGC16 | CGCFAM_00285 | Yes | 5 | 2 | |
| HRGMv2_2293_CGC8 | CGCFAM_00408 | Yes | 3 | 1 | |
| HRGMv2_2293_CGC18 | CGCFAM_01031 | Yes | 4 | 3 | |
| HRGMv2_2293_CGC21 | CGCFAM_01512 | Yes | 6 | 1 | |
| HRGMv2_2293_CGC15 | CGCFAM_01669 | Yes | 5 | 1 | |
| HRGMv2_2293_CGC19 | CGCFAM_01689 | Yes | 5 | 2 | |
| HRGMv2_2293_CGC28 | CGCFAM_02007 | Yes | 4 | 1 | |
| HRGMv2_2293_CGC13 | CGCFAM_02787 | Yes | 4 | 2 | |
| HRGMv2_2293_CGC23 | CGCFAM_03017 | Yes | 5 | 2 | |
| HRGMv2_2293_CGC4 | CGCFAM_03505 | Yes | 4 | 1 | |
| HRGMv2_2293_CGC1 | CGCFAM_07748 | Yes | 18 | 4 | |
| HRGMv2_2293_CGC5 | CGCFAM_08785 | Yes | 3 | 1 | |
| HRGMv2_2293_CGC24 | CGCFAM_09977 | Yes | 3 | 1 | |
| HRGMv2_2293_CGC22 | CGCFAM_10024 | Yes | 5 | 2 | |
| HRGMv2_2293_CGC3 | CGCFAM_10025 | Yes | 17 | 2 |
Top CAZyme Families