Cluster: HRGMv2_2293_CGC1
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2293
- CGC Family ID: CGCFAM_07748
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2293_2 | HRGMv2_2293_2_8 | 5812 | 7782 | - | 8.A.59.2.1 |
| STP | HRGMv2_2293_2 | HRGMv2_2293_2_9 | 8014 | 9288 | + | SBP_bac_1 |
| STP | HRGMv2_2293_2 | HRGMv2_2293_2_10 | 9299 | 10027 | + | AraC_binding |
| TC | HRGMv2_2293_2 | HRGMv2_2293_2_11 | 10064 | 11434 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_2293_2 | HRGMv2_2293_2_12 | 11527 | 12657 | + | GH105 |
| TC | HRGMv2_2293_2 | HRGMv2_2293_2_13 | 12678 | 13604 | + | 3.A.1.1.11 |
| TC | HRGMv2_2293_2 | HRGMv2_2293_2_14 | 13610 | 14458 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_2293_2 | HRGMv2_2293_2_15 | 14473 | 16059 | + | GH28 |
| pfam | HRGMv2_2293_2 | HRGMv2_2293_2_16 | 16061 | 16873 | + | AP_endonuc_2 |
| TC | HRGMv2_2293_2 | HRGMv2_2293_2_17 | 16880 | 18208 | + | 2.A.66.1.23 |
| pfam | HRGMv2_2293_2 | HRGMv2_2293_2_18 | 18355 | 19692 | + | Mannitol_dh | Mannitol_dh_C |
| NULL(UNKNOWN) | HRGMv2_2293_2 | HRGMv2_2293_2_19 | 19816 | 19977 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2293_2 | HRGMv2_2293_2_20 | 20043 | 21167 | - | GH105 |
| TC | HRGMv2_2293_2 | HRGMv2_2293_2_21 | 21498 | 22877 | + | 3.A.1.1.11 |
| NULL(UNKNOWN) | HRGMv2_2293_2 | HRGMv2_2293_2_22 | 23042 | 23374 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2293_2 | HRGMv2_2293_2_23 | 23415 | 24317 | + | 3.A.1.1.11 |
| TC | HRGMv2_2293_2 | HRGMv2_2293_2_24 | 24324 | 25175 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_2293_2 | HRGMv2_2293_2_25 | 25308 | 26861 | + | GH28 |
Gene ID: HRGMv2_2293_2_8
Type: TC
Location: 5812 - 7782 (-)
Type: TC
Location: 5812 - 7782 (-)
Gene ID: HRGMv2_2293_2_9
Type: STP
Location: 8014 - 9288 (+)
Type: STP
Location: 8014 - 9288 (+)
Gene ID: HRGMv2_2293_2_10
Type: STP
Location: 9299 - 10027 (+)
Type: STP
Location: 9299 - 10027 (+)
Gene ID: HRGMv2_2293_2_11
Type: TC
Location: 10064 - 11434 (+)
Type: TC
Location: 10064 - 11434 (+)
Gene ID: HRGMv2_2293_2_12
Type: CAZyme
Location: 11527 - 12657 (+)
Type: CAZyme
Location: 11527 - 12657 (+)
Gene ID: HRGMv2_2293_2_13
Type: TC
Location: 12678 - 13604 (+)
Type: TC
Location: 12678 - 13604 (+)
Gene ID: HRGMv2_2293_2_14
Type: TC
Location: 13610 - 14458 (+)
Type: TC
Location: 13610 - 14458 (+)
Gene ID: HRGMv2_2293_2_15
Type: CAZyme
Location: 14473 - 16059 (+)
Type: CAZyme
Location: 14473 - 16059 (+)
Gene ID: HRGMv2_2293_2_16
Type: pfam
Location: 16061 - 16873 (+)
Type: pfam
Location: 16061 - 16873 (+)
Gene ID: HRGMv2_2293_2_17
Type: TC
Location: 16880 - 18208 (+)
Type: TC
Location: 16880 - 18208 (+)
Gene ID: HRGMv2_2293_2_18
Type: pfam
Location: 18355 - 19692 (+)
Type: pfam
Location: 18355 - 19692 (+)
Gene ID: HRGMv2_2293_2_19
Type:
Location: 19816 - 19977 (+)
Type:
Location: 19816 - 19977 (+)
Gene ID: HRGMv2_2293_2_20
Type: CAZyme
Location: 20043 - 21167 (-)
Type: CAZyme
Location: 20043 - 21167 (-)
Gene ID: HRGMv2_2293_2_21
Type: TC
Location: 21498 - 22877 (+)
Type: TC
Location: 21498 - 22877 (+)
Gene ID: HRGMv2_2293_2_22
Type:
Location: 23042 - 23374 (+)
Type:
Location: 23042 - 23374 (+)
Gene ID: HRGMv2_2293_2_23
Type: TC
Location: 23415 - 24317 (+)
Type: TC
Location: 23415 - 24317 (+)
Gene ID: HRGMv2_2293_2_24
Type: TC
Location: 24324 - 25175 (+)
Type: TC
Location: 24324 - 25175 (+)
Gene ID: HRGMv2_2293_2_25
Type: CAZyme
Location: 25308 - 26861 (+)
Type: CAZyme
Location: 25308 - 26861 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3402
Species
UBA3402 sp934418055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.