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Cluster: HRGMv2_2293_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2293_5 HRGMv2_2293_5_3 989 1708 + 3.A.2.1.5
TC HRGMv2_2293_5 HRGMv2_2293_5_4 1883 2140 + 3.A.2.1.5
pfam HRGMv2_2293_5 HRGMv2_2293_5_5 2179 2700 + ATP-synt_B | Mt_ATP-synt_B
TC HRGMv2_2293_5 HRGMv2_2293_5_6 2688 3236 + 3.A.2.1.6
TC HRGMv2_2293_5 HRGMv2_2293_5_7 3271 4773 + 3.A.2.1.5
TC HRGMv2_2293_5 HRGMv2_2293_5_8 4794 5651 + 3.A.2.1.5
TC HRGMv2_2293_5 HRGMv2_2293_5_9 5715 7106 + 3.A.2.1.5
TC HRGMv2_2293_5 HRGMv2_2293_5_10 7118 7519 + 3.A.2.1.1
TC HRGMv2_2293_5 HRGMv2_2293_5_11 7751 9241 + 8.A.59.2.1
TF HRGMv2_2293_5 HRGMv2_2293_5_12 9292 10158 + HTH_AraC | HTH_AraC
TC HRGMv2_2293_5 HRGMv2_2293_5_13 10179 11192 + 2.A.56.1.5
CAZyme HRGMv2_2293_5 HRGMv2_2293_5_14 11250 12527 - PL22
peptidase HRGMv2_2293_5 HRGMv2_2293_5_15 12610 13377 - S09.UPW
TC HRGMv2_2293_5 HRGMv2_2293_5_16 13438 14727 - 2.A.56.1.5
pfam HRGMv2_2293_5 HRGMv2_2293_5_17 14727 15248 - DctQ
TC HRGMv2_2293_5 HRGMv2_2293_5_18 15319 16449 - 2.A.56.1.3
CAZyme HRGMv2_2293_5 HRGMv2_2293_5_19 16769 18577 + CBM48 | GH13_9
Gene ID: HRGMv2_2293_5_3
Type: TC
Location: 989 - 1708 (+)
Gene ID: HRGMv2_2293_5_4
Type: TC
Location: 1883 - 2140 (+)
Gene ID: HRGMv2_2293_5_5
Type: pfam
Location: 2179 - 2700 (+)
Gene ID: HRGMv2_2293_5_6
Type: TC
Location: 2688 - 3236 (+)
Gene ID: HRGMv2_2293_5_7
Type: TC
Location: 3271 - 4773 (+)
Gene ID: HRGMv2_2293_5_8
Type: TC
Location: 4794 - 5651 (+)
Gene ID: HRGMv2_2293_5_9
Type: TC
Location: 5715 - 7106 (+)
Gene ID: HRGMv2_2293_5_10
Type: TC
Location: 7118 - 7519 (+)
Gene ID: HRGMv2_2293_5_11
Type: TC
Location: 7751 - 9241 (+)
Gene ID: HRGMv2_2293_5_12
Type: TF
Location: 9292 - 10158 (+)
Gene ID: HRGMv2_2293_5_13
Type: TC
Location: 10179 - 11192 (+)
Gene ID: HRGMv2_2293_5_14
Type: CAZyme
Location: 11250 - 12527 (-)
Gene ID: HRGMv2_2293_5_15
Type: peptidase
Location: 12610 - 13377 (-)
Gene ID: HRGMv2_2293_5_16
Type: TC
Location: 13438 - 14727 (-)
Gene ID: HRGMv2_2293_5_17
Type: pfam
Location: 14727 - 15248 (-)
Gene ID: HRGMv2_2293_5_18
Type: TC
Location: 15319 - 16449 (-)
Gene ID: HRGMv2_2293_5_19
Type: CAZyme
Location: 16769 - 18577 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2293_5_8 vegetarian > vegan 1.21081 0.03149
HRGMv2_2293_5_10 vegetarian > omnivore 1.05994 0.03323
HRGMv2_2293_5_10 vegetarian > vegan 1.30084 0.03149
HRGMv2_2293_5_14 vegetarian > omnivore 1.57192 0.03323
HRGMv2_2293_5_15 vegetarian > omnivore 1.34939 0.03323

🧭 Explore Read Mapping of CGC

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