Cluster: HRGMv2_2293_CGC26
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2293
- CGC Family ID: CGCFAM_00259
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2293_220 | HRGMv2_2293_220_1 | 69 | 974 | + | 3.A.1.1.10 |
| TC | HRGMv2_2293_220 | HRGMv2_2293_220_2 | 1000 | 1905 | + | 3.A.1.1.10 |
| CAZyme | HRGMv2_2293_220 | HRGMv2_2293_220_3 | 1963 | 3729 | + | GH154 |
| CAZyme | HRGMv2_2293_220 | HRGMv2_2293_220_4 | 3716 | 4843 | + | GH88 |
Gene ID: HRGMv2_2293_220_1
Type: TC
Location: 69 - 974 (+)
Type: TC
Location: 69 - 974 (+)
Gene ID: HRGMv2_2293_220_2
Type: TC
Location: 1000 - 1905 (+)
Type: TC
Location: 1000 - 1905 (+)
Gene ID: HRGMv2_2293_220_3
Type: CAZyme
Location: 1963 - 3729 (+)
Type: CAZyme
Location: 1963 - 3729 (+)
Gene ID: HRGMv2_2293_220_4
Type: CAZyme
Location: 3716 - 4843 (+)
Type: CAZyme
Location: 3716 - 4843 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3402
Species
UBA3402 sp934418055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2293_220_4 | vegetarian > omnivore | 3.05838 | 0.03323 |
| HRGMv2_2293_220_4 | vegetarian > vegan | 1.62800 | 0.03149 |