Cluster: HRGMv2_2293_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2293
- CGC Family ID: CGCFAM_03017
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2293_182 | HRGMv2_2293_182_2 | 192 | 1565 | - | 9.B.18.1.3 |
| pfam | HRGMv2_2293_182 | HRGMv2_2293_182_3 | 1570 | 2082 | - | NusG |
| NULL(UNKNOWN) | HRGMv2_2293_182 | HRGMv2_2293_182_4 | 2316 | 3830 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2293_182 | HRGMv2_2293_182_5 | 3797 | 4672 | - | GT2 |
| CAZyme | HRGMv2_2293_182 | HRGMv2_2293_182_6 | 4677 | 5423 | - | GT32 |
Gene ID: HRGMv2_2293_182_2
Type: TC
Location: 192 - 1565 (-)
Type: TC
Location: 192 - 1565 (-)
Gene ID: HRGMv2_2293_182_3
Type: pfam
Location: 1570 - 2082 (-)
Type: pfam
Location: 1570 - 2082 (-)
Gene ID: HRGMv2_2293_182_4
Type:
Location: 2316 - 3830 (-)
Type:
Location: 2316 - 3830 (-)
Gene ID: HRGMv2_2293_182_5
Type: CAZyme
Location: 3797 - 4672 (-)
Type: CAZyme
Location: 3797 - 4672 (-)
Gene ID: HRGMv2_2293_182_6
Type: CAZyme
Location: 4677 - 5423 (-)
Type: CAZyme
Location: 4677 - 5423 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3402
Species
UBA3402 sp934418055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2293_182_3 | vegetarian > omnivore | 1.35841 | 0.03323 |
| HRGMv2_2293_182_3 | vegetarian > vegan | 2.22363 | 0.03149 |