Cluster: HRGMv2_2293_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2293
- CGC Family ID: CGCFAM_00285
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2293_76 | HRGMv2_2293_76_1 | 257 | 1210 | + | CE8 |
| TC | HRGMv2_2293_76 | HRGMv2_2293_76_2 | 1215 | 2126 | + | 3.A.1.1.10 |
| TC | HRGMv2_2293_76 | HRGMv2_2293_76_3 | 2138 | 3013 | + | 3.A.1.1.29 |
| TF | HRGMv2_2293_76 | HRGMv2_2293_76_4 | 3082 | 5325 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2293_76 | HRGMv2_2293_76_5 | 5352 | 6653 | + | GH109 |
Gene ID: HRGMv2_2293_76_1
Type: CAZyme
Location: 257 - 1210 (+)
Type: CAZyme
Location: 257 - 1210 (+)
Gene ID: HRGMv2_2293_76_2
Type: TC
Location: 1215 - 2126 (+)
Type: TC
Location: 1215 - 2126 (+)
Gene ID: HRGMv2_2293_76_3
Type: TC
Location: 2138 - 3013 (+)
Type: TC
Location: 2138 - 3013 (+)
Gene ID: HRGMv2_2293_76_4
Type: TF
Location: 3082 - 5325 (+)
Type: TF
Location: 3082 - 5325 (+)
Gene ID: HRGMv2_2293_76_5
Type: CAZyme
Location: 5352 - 6653 (+)
Type: CAZyme
Location: 5352 - 6653 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3402
Species
UBA3402 sp934418055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.