Cluster: HRGMv2_2293_CGC5
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2293
- CGC Family ID: CGCFAM_08785
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2293_9 | HRGMv2_2293_9_1 | 112 | 1347 | + | 1.A.11.2.7 |
| pfam | HRGMv2_2293_9 | HRGMv2_2293_9_2 | 1344 | 1607 | - | GIY-YIG |
| CAZyme | HRGMv2_2293_9 | HRGMv2_2293_9_3 | 1843 | 3432 | - | CBM50 |
Gene ID: HRGMv2_2293_9_1
Type: TC
Location: 112 - 1347 (+)
Type: TC
Location: 112 - 1347 (+)
Gene ID: HRGMv2_2293_9_2
Type: pfam
Location: 1344 - 1607 (-)
Type: pfam
Location: 1344 - 1607 (-)
Gene ID: HRGMv2_2293_9_3
Type: CAZyme
Location: 1843 - 3432 (-)
Type: CAZyme
Location: 1843 - 3432 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3402
Species
UBA3402 sp934418055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2293_9_2 | vegetarian > vegan | 1.19943 | 0.03149 |