Genome Details
Selected Rep_genome_ID: HRGMv2_0378
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
43-108
Species
43-108 sp001915545
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR046347 | 3,341,402 | 94.73% | 0.37% | China | Asia | CGMR |
| HRGMv2_0378 | 3,911,327 | 97.08% | 0.185% | UK | Europe | HRGM |
| MGYG000003992 | 3,355,495 | 97.09% | 0.31% | United Kingdom | Europe | UHGG |
| Rep_267 | 3,254,259 | 96.2206% | 0.371747% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0378_CGC53 | CGCFAM_00001 | Yes | 6 | 3 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| HRGMv2_0378_CGC55 | CGCFAM_00061 | Yes | 5 | 2 | |
| HRGMv2_0378_CGC7 | CGCFAM_00080 | Yes | 3 | 1 | |
| HRGMv2_0378_CGC44 | CGCFAM_00164 | Yes | 4 | 1 | |
| HRGMv2_0378_CGC46 | CGCFAM_00316 | Yes | 7 | 1 | |
| HRGMv2_0378_CGC21 | CGCFAM_00523 | Yes | 4 | 1 | |
| HRGMv2_0378_CGC38 | CGCFAM_00715 | Yes | 3 | 1 | |
| HRGMv2_0378_CGC12 | CGCFAM_00795 | Yes | 3 | 1 | |
| HRGMv2_0378_CGC29 | CGCFAM_01688 | Yes | 17 | 6 | |
| HRGMv2_0378_CGC31 | CGCFAM_02125 | Yes | 4 | 1 | |
| HRGMv2_0378_CGC45 | CGCFAM_04000 | Yes | 10 | 6 | |
| HRGMv2_0378_CGC52 | CGCFAM_04251 | Yes | 3 | 1 | |
| HRGMv2_0378_CGC22 | CGCFAM_04648 | Yes | 4 | 2 | |
| HRGMv2_0378_CGC13 | CGCFAM_04936 | Yes | 4 | 1 | |
| HRGMv2_0378_CGC39 | CGCFAM_05031 | Yes | 7 | 1 | |
| HRGMv2_0378_CGC5 | CGCFAM_09638 | Yes | 4 | 2 |
Top CAZyme Families