Cluster: HRGMv2_0378_CGC29
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0378
- CGC Family ID: CGCFAM_01688
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0378_13 | HRGMv2_0378_13_23 | 35010 | 36434 | + | 2.A.66.2.2 |
| CAZyme | HRGMv2_0378_13 | HRGMv2_0378_13_24 | 36529 | 37674 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_0378_13 | HRGMv2_0378_13_25 | 37687 | 38910 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0378_13 | HRGMv2_0378_13_26 | 39494 | 40105 | + | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_0378_13 | HRGMv2_0378_13_27 | 40108 | 41382 | + | GT4 |
| pfam | HRGMv2_0378_13 | HRGMv2_0378_13_28 | 41424 | 42095 | + | Hexapep | Hexapep_2 |
| pfam | HRGMv2_0378_13 | HRGMv2_0378_13_29 | 42284 | 43045 | + | Glycos_transf_2 |
| CAZyme | HRGMv2_0378_13 | HRGMv2_0378_13_30 | 43042 | 44040 | + | GT2 |
| CAZyme | HRGMv2_0378_13 | HRGMv2_0378_13_31 | 44243 | 45298 | + | GT4 |
| pfam | HRGMv2_0378_13 | HRGMv2_0378_13_32 | 45364 | 46374 | + | Glycos_transf_1 | Glyco_trans_1_4 |
| pfam | HRGMv2_0378_13 | HRGMv2_0378_13_33 | 46598 | 47173 | + | Hexapep |
| CAZyme | HRGMv2_0378_13 | HRGMv2_0378_13_34 | 47247 | 48407 | + | GT4 |
| pfam | HRGMv2_0378_13 | HRGMv2_0378_13_35 | 48574 | 49770 | + | Radical_SAM | SPASM |
| NULL(UNKNOWN) | HRGMv2_0378_13 | HRGMv2_0378_13_36 | 49856 | 50038 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0378_13 | HRGMv2_0378_13_37 | 50125 | 51552 | + | 2.A.50.2.1 |
| NULL(UNKNOWN) | HRGMv2_0378_13 | HRGMv2_0378_13_38 | 51564 | 52466 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0378_13 | HRGMv2_0378_13_39 | 52639 | 53724 | + | GT4 |
Gene ID: HRGMv2_0378_13_23
Type: TC
Location: 35010 - 36434 (+)
Type: TC
Location: 35010 - 36434 (+)
Gene ID: HRGMv2_0378_13_24
Type: CAZyme
Location: 36529 - 37674 (+)
Type: CAZyme
Location: 36529 - 37674 (+)
Gene ID: HRGMv2_0378_13_25
Type:
Location: 37687 - 38910 (+)
Type:
Location: 37687 - 38910 (+)
Gene ID: HRGMv2_0378_13_26
Type: pfam
Location: 39494 - 40105 (+)
Type: pfam
Location: 39494 - 40105 (+)
Gene ID: HRGMv2_0378_13_27
Type: CAZyme
Location: 40108 - 41382 (+)
Type: CAZyme
Location: 40108 - 41382 (+)
Gene ID: HRGMv2_0378_13_28
Type: pfam
Location: 41424 - 42095 (+)
Type: pfam
Location: 41424 - 42095 (+)
Gene ID: HRGMv2_0378_13_29
Type: pfam
Location: 42284 - 43045 (+)
Type: pfam
Location: 42284 - 43045 (+)
Gene ID: HRGMv2_0378_13_30
Type: CAZyme
Location: 43042 - 44040 (+)
Type: CAZyme
Location: 43042 - 44040 (+)
Gene ID: HRGMv2_0378_13_31
Type: CAZyme
Location: 44243 - 45298 (+)
Type: CAZyme
Location: 44243 - 45298 (+)
Gene ID: HRGMv2_0378_13_32
Type: pfam
Location: 45364 - 46374 (+)
Type: pfam
Location: 45364 - 46374 (+)
Gene ID: HRGMv2_0378_13_33
Type: pfam
Location: 46598 - 47173 (+)
Type: pfam
Location: 46598 - 47173 (+)
Gene ID: HRGMv2_0378_13_34
Type: CAZyme
Location: 47247 - 48407 (+)
Type: CAZyme
Location: 47247 - 48407 (+)
Gene ID: HRGMv2_0378_13_35
Type: pfam
Location: 48574 - 49770 (+)
Type: pfam
Location: 48574 - 49770 (+)
Gene ID: HRGMv2_0378_13_36
Type:
Location: 49856 - 50038 (+)
Type:
Location: 49856 - 50038 (+)
Gene ID: HRGMv2_0378_13_37
Type: TC
Location: 50125 - 51552 (+)
Type: TC
Location: 50125 - 51552 (+)
Gene ID: HRGMv2_0378_13_38
Type:
Location: 51564 - 52466 (+)
Type:
Location: 51564 - 52466 (+)
Gene ID: HRGMv2_0378_13_39
Type: CAZyme
Location: 52639 - 53724 (+)
Type: CAZyme
Location: 52639 - 53724 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
43-108
Species
43-108 sp001915545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.