Cluster: HRGMv2_0378_CGC39
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0378
- CGC Family ID: CGCFAM_05031
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0378_27 | HRGMv2_0378_27_11 | 12884 | 15307 | + | PL11_1 |
| pfam | HRGMv2_0378_27 | HRGMv2_0378_27_12 | 15544 | 16485 | + | PorP_SprF |
| TC | HRGMv2_0378_27 | HRGMv2_0378_27_13 | 16498 | 17934 | + | 9.A.25.1.1 |
| pfam | HRGMv2_0378_27 | HRGMv2_0378_27_14 | 17950 | 18792 | + | GldL_N |
| TC | HRGMv2_0378_27 | HRGMv2_0378_27_15 | 18879 | 20450 | + | 9.A.25.1.1 |
| pfam | HRGMv2_0378_27 | HRGMv2_0378_27_16 | 20486 | 21526 | + | GldN |
| TC | HRGMv2_0378_27 | HRGMv2_0378_27_17 | 21635 | 24094 | - | 3.A.11.3.1 |
Gene ID: HRGMv2_0378_27_11
Type: CAZyme
Location: 12884 - 15307 (+)
Type: CAZyme
Location: 12884 - 15307 (+)
Gene ID: HRGMv2_0378_27_12
Type: pfam
Location: 15544 - 16485 (+)
Type: pfam
Location: 15544 - 16485 (+)
Gene ID: HRGMv2_0378_27_13
Type: TC
Location: 16498 - 17934 (+)
Type: TC
Location: 16498 - 17934 (+)
Gene ID: HRGMv2_0378_27_14
Type: pfam
Location: 17950 - 18792 (+)
Type: pfam
Location: 17950 - 18792 (+)
Gene ID: HRGMv2_0378_27_15
Type: TC
Location: 18879 - 20450 (+)
Type: TC
Location: 18879 - 20450 (+)
Gene ID: HRGMv2_0378_27_16
Type: pfam
Location: 20486 - 21526 (+)
Type: pfam
Location: 20486 - 21526 (+)
Gene ID: HRGMv2_0378_27_17
Type: TC
Location: 21635 - 24094 (-)
Type: TC
Location: 21635 - 24094 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
43-108
Species
43-108 sp001915545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.