Cluster: HRGMv2_0378_CGC46
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0378
- CGC Family ID: CGCFAM_00316
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0378_38 | HRGMv2_0378_38_6 | 6802 | 9270 | - | GH31_4 |
| TF | HRGMv2_0378_38 | HRGMv2_0378_38_7 | 9354 | 12005 | - | HTH_AraC |
| TC | HRGMv2_0378_38 | HRGMv2_0378_38_8 | 12266 | 12721 | - | 3.A.2.2.2 |
| TC | HRGMv2_0378_38 | HRGMv2_0378_38_9 | 12760 | 14622 | - | 3.A.2.2.2 |
| pfam | HRGMv2_0378_38 | HRGMv2_0378_38_10 | 14619 | 15224 | - | ATP-synt_D |
| TC | HRGMv2_0378_38 | HRGMv2_0378_38_11 | 15326 | 16651 | - | 3.A.2.3.3 |
| TC | HRGMv2_0378_38 | HRGMv2_0378_38_12 | 16664 | 18418 | - | 3.A.2.3.3 |
Gene ID: HRGMv2_0378_38_6
Type: CAZyme
Location: 6802 - 9270 (-)
Type: CAZyme
Location: 6802 - 9270 (-)
Gene ID: HRGMv2_0378_38_7
Type: TF
Location: 9354 - 12005 (-)
Type: TF
Location: 9354 - 12005 (-)
Gene ID: HRGMv2_0378_38_8
Type: TC
Location: 12266 - 12721 (-)
Type: TC
Location: 12266 - 12721 (-)
Gene ID: HRGMv2_0378_38_9
Type: TC
Location: 12760 - 14622 (-)
Type: TC
Location: 12760 - 14622 (-)
Gene ID: HRGMv2_0378_38_10
Type: pfam
Location: 14619 - 15224 (-)
Type: pfam
Location: 14619 - 15224 (-)
Gene ID: HRGMv2_0378_38_11
Type: TC
Location: 15326 - 16651 (-)
Type: TC
Location: 15326 - 16651 (-)
Gene ID: HRGMv2_0378_38_12
Type: TC
Location: 16664 - 18418 (-)
Type: TC
Location: 16664 - 18418 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
43-108
Species
43-108 sp001915545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.