Cluster: HRGMv2_0378_CGC53
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0378
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0378_49 | HRGMv2_0378_49_1 | 350 | 2677 | - | GH3 |
| CAZyme | HRGMv2_0378_49 | HRGMv2_0378_49_2 | 2693 | 3886 | - | CE1 |
| peptidase | HRGMv2_0378_49 | HRGMv2_0378_49_3 | 3912 | 5306 | - | S09.UPW |
| CAZyme | HRGMv2_0378_49 | HRGMv2_0378_49_4 | 5713 | 7368 | - | CE1 |
| pfam | HRGMv2_0378_49 | HRGMv2_0378_49_5 | 7397 | 8962 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0378_49 | HRGMv2_0378_49_6 | 8996 | 12085 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0378_49_1
Type: CAZyme
Location: 350 - 2677 (-)
Type: CAZyme
Location: 350 - 2677 (-)
Gene ID: HRGMv2_0378_49_2
Type: CAZyme
Location: 2693 - 3886 (-)
Type: CAZyme
Location: 2693 - 3886 (-)
Gene ID: HRGMv2_0378_49_3
Type: peptidase
Location: 3912 - 5306 (-)
Type: peptidase
Location: 3912 - 5306 (-)
Gene ID: HRGMv2_0378_49_4
Type: CAZyme
Location: 5713 - 7368 (-)
Type: CAZyme
Location: 5713 - 7368 (-)
Gene ID: HRGMv2_0378_49_5
Type: pfam
Location: 7397 - 8962 (-)
Type: pfam
Location: 7397 - 8962 (-)
Gene ID: HRGMv2_0378_49_6
Type: TC
Location: 8996 - 12085 (-)
Type: TC
Location: 8996 - 12085 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
43-108
Species
43-108 sp001915545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.