Genome Details
Selected Rep_genome_ID: HRGMv2_0154
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp900539755
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| A38.CMAG_4 | 2,464,643 | 100% | 0.48% | China(Inner Mongolia) | Asia | IMGG |
| BF088_bin.97 | 2,552,477 | 100% | 0.48% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_0154 | 2,448,255 | 100% | 0% | South Korea | Asia | HRGM |
| MGYG000004468 | 2,418,771 | 100% | 0.48% | Israel | Asia | UHGG |
| Rep_590 | 2,532,919 | 99.7596% | 0.480769% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0154_CGC13 | CGCFAM_00013 | Yes | 7 | 1 | |
| HRGMv2_0154_CGC5 | CGCFAM_00423 | Yes | 3 | 1 | |
| HRGMv2_0154_CGC4 | CGCFAM_01217 | Yes | 8 | 2 | |
| HRGMv2_0154_CGC22 | CGCFAM_01905 | Yes | 4 | 1 | |
| HRGMv2_0154_CGC19 | CGCFAM_02706 | Yes | 5 | 1 | |
| HRGMv2_0154_CGC11 | CGCFAM_04628 | Yes | 3 | 1 | |
| HRGMv2_0154_CGC3 | CGCFAM_05185 | Yes | 11 | 4 | |
| HRGMv2_0154_CGC21 | CGCFAM_05186 | Yes | 4 | 1 | |
| HRGMv2_0154_CGC18 | CGCFAM_05940 | Yes | 5 | 2 | |
| HRGMv2_0154_CGC10 | CGCFAM_09183 | Yes | 14 | 1 | |
| HRGMv2_0154_CGC12 | CGCFAM_09509 | Yes | 3 | 1 | |
| HRGMv2_0154_CGC14 | CGCFAM_09510 | Yes | 8 | 1 | |
| HRGMv2_0154_CGC15 | CGCFAM_09511 | Yes | 24 | 9 | |
| HRGMv2_0154_CGC6 | CGCFAM_09512 | Yes | 5 | 2 | |
| HRGMv2_0154_CGC7 | CGCFAM_09513 | Yes | 11 | 3 | |
| HRGMv2_0154_CGC9 | CGCFAM_09514 | Yes | 12 | 9 |
Top CAZyme Families