Cluster: HRGMv2_0154_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0154
- CGC Family ID: CGCFAM_09512
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0154_1 | HRGMv2_0154_1_199 | 229051 | 230907 | + | PL35 |
| CAZyme | HRGMv2_0154_1 | HRGMv2_0154_1_200 | 230973 | 232223 | + | GH88 |
| pfam | HRGMv2_0154_1 | HRGMv2_0154_1_201 | 232606 | 233025 | - | TsaE |
| STP | HRGMv2_0154_1 | HRGMv2_0154_1_202 | 233427 | 234983 | - | PglZ | Response_reg |
| TC | HRGMv2_0154_1 | HRGMv2_0154_1_203 | 235209 | 238034 | + | 1.B.14.12.3 |
Gene ID: HRGMv2_0154_1_199
Type: CAZyme
Location: 229051 - 230907 (+)
Type: CAZyme
Location: 229051 - 230907 (+)
Gene ID: HRGMv2_0154_1_200
Type: CAZyme
Location: 230973 - 232223 (+)
Type: CAZyme
Location: 230973 - 232223 (+)
Gene ID: HRGMv2_0154_1_201
Type: pfam
Location: 232606 - 233025 (-)
Type: pfam
Location: 232606 - 233025 (-)
Gene ID: HRGMv2_0154_1_202
Type: STP
Location: 233427 - 234983 (-)
Type: STP
Location: 233427 - 234983 (-)
Gene ID: HRGMv2_0154_1_203
Type: TC
Location: 235209 - 238034 (+)
Type: TC
Location: 235209 - 238034 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp900539755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.