Cluster: HRGMv2_0154_CGC10
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0154
- CGC Family ID: CGCFAM_09183
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0154_2 | HRGMv2_0154_2_53 | 50736 | 52154 | - | 3.D.1.8.1 |
| TC | HRGMv2_0154_2 | HRGMv2_0154_2_54 | 52161 | 53654 | - | 3.D.1.5.1 |
| TC | HRGMv2_0154_2 | HRGMv2_0154_2_55 | 53677 | 55587 | - | 3.D.9.1.1 |
| TC | HRGMv2_0154_2 | HRGMv2_0154_2_56 | 55600 | 55908 | - | 3.D.1.2.1 |
| TC | HRGMv2_0154_2 | HRGMv2_0154_2_57 | 55912 | 56430 | - | 3.D.1.1.1 |
| STP | HRGMv2_0154_2 | HRGMv2_0154_2_58 | 56437 | 56904 | - | Fer4 |
| TC | HRGMv2_0154_2 | HRGMv2_0154_2_59 | 56917 | 57993 | - | 3.D.1.5.1 |
| TC | HRGMv2_0154_2 | HRGMv2_0154_2_60 | 58024 | 59652 | - | 3.D.1.5.1 |
| TC | HRGMv2_0154_2 | HRGMv2_0154_2_61 | 59645 | 60226 | - | 3.D.1.6.1 |
| TC | HRGMv2_0154_2 | HRGMv2_0154_2_62 | 60238 | 60588 | - | 3.D.1.8.1 |
| TC | HRGMv2_0154_2 | HRGMv2_0154_2_63 | 61980 | 63842 | - | 3.B.1.1.6 |
| pfam | HRGMv2_0154_2 | HRGMv2_0154_2_64 | 64317 | 65738 | + | DUF5074 |
| pfam | HRGMv2_0154_2 | HRGMv2_0154_2_65 | 66063 | 68129 | + | Plug |
| CAZyme | HRGMv2_0154_2 | HRGMv2_0154_2_66 | 68902 | 71031 | + | GH78 |
Gene ID: HRGMv2_0154_2_53
Type: TC
Location: 50736 - 52154 (-)
Type: TC
Location: 50736 - 52154 (-)
Gene ID: HRGMv2_0154_2_54
Type: TC
Location: 52161 - 53654 (-)
Type: TC
Location: 52161 - 53654 (-)
Gene ID: HRGMv2_0154_2_55
Type: TC
Location: 53677 - 55587 (-)
Type: TC
Location: 53677 - 55587 (-)
Gene ID: HRGMv2_0154_2_56
Type: TC
Location: 55600 - 55908 (-)
Type: TC
Location: 55600 - 55908 (-)
Gene ID: HRGMv2_0154_2_57
Type: TC
Location: 55912 - 56430 (-)
Type: TC
Location: 55912 - 56430 (-)
Gene ID: HRGMv2_0154_2_58
Type: STP
Location: 56437 - 56904 (-)
Type: STP
Location: 56437 - 56904 (-)
Gene ID: HRGMv2_0154_2_59
Type: TC
Location: 56917 - 57993 (-)
Type: TC
Location: 56917 - 57993 (-)
Gene ID: HRGMv2_0154_2_60
Type: TC
Location: 58024 - 59652 (-)
Type: TC
Location: 58024 - 59652 (-)
Gene ID: HRGMv2_0154_2_61
Type: TC
Location: 59645 - 60226 (-)
Type: TC
Location: 59645 - 60226 (-)
Gene ID: HRGMv2_0154_2_62
Type: TC
Location: 60238 - 60588 (-)
Type: TC
Location: 60238 - 60588 (-)
Gene ID: HRGMv2_0154_2_63
Type: TC
Location: 61980 - 63842 (-)
Type: TC
Location: 61980 - 63842 (-)
Gene ID: HRGMv2_0154_2_64
Type: pfam
Location: 64317 - 65738 (+)
Type: pfam
Location: 64317 - 65738 (+)
Gene ID: HRGMv2_0154_2_65
Type: pfam
Location: 66063 - 68129 (+)
Type: pfam
Location: 66063 - 68129 (+)
Gene ID: HRGMv2_0154_2_66
Type: CAZyme
Location: 68902 - 71031 (+)
Type: CAZyme
Location: 68902 - 71031 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp900539755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0154_2_53 | vegetarian > omnivore | 1.02386 | 0.02164 |
| HRGMv2_0154_2_56 | vegetarian > omnivore | 2.52840 | 0.02164 |
| HRGMv2_0154_2_57 | vegan > omnivore | 1.03400 | 0.04238 |
| HRGMv2_0154_2_57 | vegetarian > omnivore | 1.64848 | 0.02164 |
| HRGMv2_0154_2_59 | vegetarian > omnivore | 1.11058 | 0.02164 |