Cluster: HRGMv2_0154_CGC5
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0154
- CGC Family ID: CGCFAM_00423
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0154_1 | HRGMv2_0154_1_183 | 212884 | 215475 | - | 3.A.9.1.2 |
| pfam | HRGMv2_0154_1 | HRGMv2_0154_1_184 | 216244 | 216495 | - | Ribosomal_S20p |
| CAZyme | HRGMv2_0154_1 | HRGMv2_0154_1_185 | 216777 | 217772 | + | GT4 |
Gene ID: HRGMv2_0154_1_183
Type: TC
Location: 212884 - 215475 (-)
Type: TC
Location: 212884 - 215475 (-)
Gene ID: HRGMv2_0154_1_184
Type: pfam
Location: 216244 - 216495 (-)
Type: pfam
Location: 216244 - 216495 (-)
Gene ID: HRGMv2_0154_1_185
Type: CAZyme
Location: 216777 - 217772 (+)
Type: CAZyme
Location: 216777 - 217772 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp900539755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0154_1_184 | vegetarian > omnivore | 1.03515 | 0.02164 |
| HRGMv2_0154_1_184 | vegetarian > vegan | 1.97389 | 0.03778 |