Cluster: HRGMv2_0154_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0154
- CGC Family ID: CGCFAM_02706
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0154_4 | HRGMv2_0154_4_16 | 17124 | 18431 | + | 2.A.13.1.3 |
| pfam | HRGMv2_0154_4 | HRGMv2_0154_4_17 | 18749 | 19615 | - | Ion_trans_2 |
| TC | HRGMv2_0154_4 | HRGMv2_0154_4_18 | 19881 | 22178 | - | 1.B.14.10.1 |
| CAZyme | HRGMv2_0154_4 | HRGMv2_0154_4_19 | 22785 | 23438 | + | GH25 |
| TC | HRGMv2_0154_4 | HRGMv2_0154_4_20 | 23438 | 25021 | + | 3.D.10.1.1 |
Gene ID: HRGMv2_0154_4_16
Type: TC
Location: 17124 - 18431 (+)
Type: TC
Location: 17124 - 18431 (+)
Gene ID: HRGMv2_0154_4_17
Type: pfam
Location: 18749 - 19615 (-)
Type: pfam
Location: 18749 - 19615 (-)
Gene ID: HRGMv2_0154_4_18
Type: TC
Location: 19881 - 22178 (-)
Type: TC
Location: 19881 - 22178 (-)
Gene ID: HRGMv2_0154_4_19
Type: CAZyme
Location: 22785 - 23438 (+)
Type: CAZyme
Location: 22785 - 23438 (+)
Gene ID: HRGMv2_0154_4_20
Type: TC
Location: 23438 - 25021 (+)
Type: TC
Location: 23438 - 25021 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp900539755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.