Cluster: HRGMv2_0154_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_0154
- CGC Family ID: CGCFAM_09514
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0154_1 | HRGMv2_0154_1_352 | 427188 | 428123 | + | GT2 |
| CAZyme | HRGMv2_0154_1 | HRGMv2_0154_1_353 | 428307 | 429260 | - | GT2 |
| pfam | HRGMv2_0154_1 | HRGMv2_0154_1_354 | 429603 | 430691 | - | APH |
| CAZyme | HRGMv2_0154_1 | HRGMv2_0154_1_355 | 430944 | 432329 | - | GH109 |
| CAZyme | HRGMv2_0154_1 | HRGMv2_0154_1_356 | 432591 | 434930 | - | GH92 |
| CAZyme | HRGMv2_0154_1 | HRGMv2_0154_1_357 | 435188 | 436486 | + | GH29 |
| CAZyme | HRGMv2_0154_1 | HRGMv2_0154_1_358 | 436946 | 439279 | + | GH95 |
| pfam | HRGMv2_0154_1 | HRGMv2_0154_1_359 | 439344 | 439703 | + | rhaM |
| TC | HRGMv2_0154_1 | HRGMv2_0154_1_360 | 439955 | 441625 | - | 3.A.1.26.5 |
| CAZyme | HRGMv2_0154_1 | HRGMv2_0154_1_361 | 441802 | 443721 | - | GH97 |
| CAZyme | HRGMv2_0154_1 | HRGMv2_0154_1_362 | 443801 | 444550 | - | CE3 |
| CAZyme | HRGMv2_0154_1 | HRGMv2_0154_1_363 | 444775 | 445515 | - | CE3 |
Gene ID: HRGMv2_0154_1_352
Type: CAZyme
Location: 427188 - 428123 (+)
Type: CAZyme
Location: 427188 - 428123 (+)
Gene ID: HRGMv2_0154_1_353
Type: CAZyme
Location: 428307 - 429260 (-)
Type: CAZyme
Location: 428307 - 429260 (-)
Gene ID: HRGMv2_0154_1_354
Type: pfam
Location: 429603 - 430691 (-)
Type: pfam
Location: 429603 - 430691 (-)
Gene ID: HRGMv2_0154_1_355
Type: CAZyme
Location: 430944 - 432329 (-)
Type: CAZyme
Location: 430944 - 432329 (-)
Gene ID: HRGMv2_0154_1_356
Type: CAZyme
Location: 432591 - 434930 (-)
Type: CAZyme
Location: 432591 - 434930 (-)
Gene ID: HRGMv2_0154_1_357
Type: CAZyme
Location: 435188 - 436486 (+)
Type: CAZyme
Location: 435188 - 436486 (+)
Gene ID: HRGMv2_0154_1_358
Type: CAZyme
Location: 436946 - 439279 (+)
Type: CAZyme
Location: 436946 - 439279 (+)
Gene ID: HRGMv2_0154_1_359
Type: pfam
Location: 439344 - 439703 (+)
Type: pfam
Location: 439344 - 439703 (+)
Gene ID: HRGMv2_0154_1_360
Type: TC
Location: 439955 - 441625 (-)
Type: TC
Location: 439955 - 441625 (-)
Gene ID: HRGMv2_0154_1_361
Type: CAZyme
Location: 441802 - 443721 (-)
Type: CAZyme
Location: 441802 - 443721 (-)
Gene ID: HRGMv2_0154_1_362
Type: CAZyme
Location: 443801 - 444550 (-)
Type: CAZyme
Location: 443801 - 444550 (-)
Gene ID: HRGMv2_0154_1_363
Type: CAZyme
Location: 444775 - 445515 (-)
Type: CAZyme
Location: 444775 - 445515 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A sp900539755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0154_1_354 | vegan > omnivore | 1.04662 | 0.04238 |
| HRGMv2_0154_1_354 | vegetarian > omnivore | 2.97490 | 0.02164 |
| HRGMv2_0154_1_356 | vegetarian > omnivore | 1.88451 | 0.02164 |