Genome Details
Selected Rep_genome_ID: Rep_957
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia marmotae
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| Rep_957 | 4,522,234 | 100% | 0.394345% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_957_CGC26 | CGCFAM_00123 | Yes | 12 | 4 | |
| Rep_957_CGC23 | CGCFAM_00159 | Yes | 4 | 1 | |
| PUL0311_Rep_957_C2 | CGCFAM_00177 | Yes | 3 | 2 | beta-glucan |
| Rep_957_CGC33 | CGCFAM_00373 | Yes | 3 | 1 | |
| Rep_957_CGC39 | CGCFAM_00473 | Yes | 13 | 2 | |
| Rep_957_CGC28 | CGCFAM_00474 | Yes | 3 | 1 | |
| Rep_957_CGC42 | CGCFAM_00698 | Yes | 14 | 11 | |
| Rep_957_CGC3 | CGCFAM_01194 | Yes | 13 | 2 | |
| Rep_957_CGC1 | CGCFAM_01692 | Yes | 4 | 1 | |
| Rep_957_CGC12 | CGCFAM_01811 | Yes | 5 | 1 | host glycan |
| Rep_957_CGC18 | CGCFAM_04787 | Yes | 13 | 1 | |
| Rep_957_CGC19 | CGCFAM_04910 | Yes | 5 | 1 | |
| Rep_957_CGC15 | CGCFAM_04911 | Yes | 10 | 1 | |
| Rep_957_CGC5 | CGCFAM_04912 | Yes | 5 | 1 | |
| Rep_957_CGC11 | CGCFAM_04913 | Yes | 25 | 1 | |
| Rep_957_CGC13 | CGCFAM_06346 | Yes | 10 | 1 | |
| Rep_957_CGC32 | CGCFAM_07214 | Yes | 12 | 2 | |
| Rep_957_CGC30 | CGCFAM_11309 | Yes | 18 | 1 | |
| Rep_957_CGC47 | CGCFAM_11310 | Yes | 6 | 1 |
Top CAZyme Families