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Cluster: Rep_957_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_957_c_2 Rep_957_c_2_190 227984 230221 - GT2
TC Rep_957_c_2 Rep_957_c_2_191 230371 231813 - 2.A.21.9.1
TF Rep_957_c_2 Rep_957_c_2_192 231803 232486 - Trans_reg_C
NULL(UNKNOWN) Rep_957_c_2 Rep_957_c_2_193 232533 232664 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_957_c_2 Rep_957_c_2_194 232643 234025 + 1.B.17.3.5
TC Rep_957_c_2 Rep_957_c_2_195 234050 234382 + 2.A.6.1.4
TC Rep_957_c_2 Rep_957_c_2_196 234398 235621 + 2.A.6.1.4
TC Rep_957_c_2 Rep_957_c_2_197 235633 238770 + 2.A.6.1.4
TC Rep_957_c_2 Rep_957_c_2_198 238979 240397 + 2.A.3.1.1
TC Rep_957_c_2 Rep_957_c_2_199 240494 241741 - 1.A.23.4.5
Gene ID: Rep_957_c_2_190
Type: CAZyme
Location: 227984 - 230221 (-)
Gene ID: Rep_957_c_2_191
Type: TC
Location: 230371 - 231813 (-)
Gene ID: Rep_957_c_2_192
Type: TF
Location: 231803 - 232486 (-)
Gene ID: Rep_957_c_2_193
Type:
Location: 232533 - 232664 (+)
Gene ID: Rep_957_c_2_194
Type: TC
Location: 232643 - 234025 (+)
Gene ID: Rep_957_c_2_195
Type: TC
Location: 234050 - 234382 (+)
Gene ID: Rep_957_c_2_196
Type: TC
Location: 234398 - 235621 (+)
Gene ID: Rep_957_c_2_197
Type: TC
Location: 235633 - 238770 (+)
Gene ID: Rep_957_c_2_198
Type: TC
Location: 238979 - 240397 (+)
Gene ID: Rep_957_c_2_199
Type: TC
Location: 240494 - 241741 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_957_c_2_191 omnivore > vegetarian 1.42260 0.03395
Rep_957_c_2_192 omnivore > vegetarian 1.59577 0.03395
Rep_957_c_2_194 omnivore > vegetarian 1.24336 0.04427
Rep_957_c_2_197 omnivore > vegetarian 1.12899 0.03111

🧭 Explore Read Mapping of CGC

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