Cluster: Rep_957_CGC32
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_957
- CGC Family ID: CGCFAM_07214
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_957_c_10 | Rep_957_c_10_22 | 23810 | 25327 | + | 1.B.3.1.2 |
| TC | Rep_957_c_10 | Rep_957_c_10_23 | 25388 | 26758 | + | 4.A.1.2.1 |
| CAZyme | Rep_957_c_10 | Rep_957_c_10_24 | 26764 | 28167 | + | GH32 |
| TF | Rep_957_c_10 | Rep_957_c_10_25 | 28193 | 29200 | + | LacI |
| NULL(UNKNOWN) | Rep_957_c_10 | Rep_957_c_10_26 | 30108 | 30221 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_957_c_10 | Rep_957_c_10_27 | 30530 | 31270 | + | 1.B.6.2.13 |
| pfam | Rep_957_c_10 | Rep_957_c_10_28 | 31430 | 32929 | + | Sulfatase |
| pfam | Rep_957_c_10 | Rep_957_c_10_29 | 33247 | 34512 | - | Phage_integrase | Arm-DNA-bind_3 | Phage_int_M |
| TC | Rep_957_c_10 | Rep_957_c_10_30 | 34891 | 35598 | - | 9.B.120.1.1 |
| pfam | Rep_957_c_10 | Rep_957_c_10_31 | 35997 | 38132 | + | OKR_DC_1 | OKR_DC_1_N | OKR_DC_1_C |
| TC | Rep_957_c_10 | Rep_957_c_10_32 | 38181 | 39437 | - | 2.A.1.10.1 |
| CAZyme | Rep_957_c_10 | Rep_957_c_10_33 | 39637 | 40716 | - | GH23 |
Gene ID: Rep_957_c_10_22
Type: TC
Location: 23810 - 25327 (+)
Type: TC
Location: 23810 - 25327 (+)
Gene ID: Rep_957_c_10_23
Type: TC
Location: 25388 - 26758 (+)
Type: TC
Location: 25388 - 26758 (+)
Gene ID: Rep_957_c_10_24
Type: CAZyme
Location: 26764 - 28167 (+)
Type: CAZyme
Location: 26764 - 28167 (+)
Gene ID: Rep_957_c_10_25
Type: TF
Location: 28193 - 29200 (+)
Type: TF
Location: 28193 - 29200 (+)
Gene ID: Rep_957_c_10_26
Type:
Location: 30108 - 30221 (-)
Type:
Location: 30108 - 30221 (-)
Gene ID: Rep_957_c_10_27
Type: TC
Location: 30530 - 31270 (+)
Type: TC
Location: 30530 - 31270 (+)
Gene ID: Rep_957_c_10_28
Type: pfam
Location: 31430 - 32929 (+)
Type: pfam
Location: 31430 - 32929 (+)
Gene ID: Rep_957_c_10_29
Type: pfam
Location: 33247 - 34512 (-)
Type: pfam
Location: 33247 - 34512 (-)
Gene ID: Rep_957_c_10_30
Type: TC
Location: 34891 - 35598 (-)
Type: TC
Location: 34891 - 35598 (-)
Gene ID: Rep_957_c_10_31
Type: pfam
Location: 35997 - 38132 (+)
Type: pfam
Location: 35997 - 38132 (+)
Gene ID: Rep_957_c_10_32
Type: TC
Location: 38181 - 39437 (-)
Type: TC
Location: 38181 - 39437 (-)
Gene ID: Rep_957_c_10_33
Type: CAZyme
Location: 39637 - 40716 (-)
Type: CAZyme
Location: 39637 - 40716 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia marmotae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_957_c_10_29 | omnivore > vegetarian | 1.97191 | 0.03395 |
| Rep_957_c_10_30 | omnivore > vegetarian | 1.04913 | 0.03395 |