Cluster: Rep_957_CGC42
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 11
- Substrate:
- Genome ID: Rep_957
- CGC Family ID: CGCFAM_00698
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_957_c_15 | Rep_957_c_15_50 | 49964 | 51241 | - | GT30 |
| CAZyme | Rep_957_c_15 | Rep_957_c_15_51 | 51648 | 52718 | + | GT9 |
| CAZyme | Rep_957_c_15 | Rep_957_c_15_52 | 52715 | 53839 | + | GT4 |
| pfam | Rep_957_c_15 | Rep_957_c_15_53 | 53832 | 54629 | + | Kdo |
| CAZyme | Rep_957_c_15 | Rep_957_c_15_54 | 54769 | 55641 | + | GT8 |
| CAZyme | Rep_957_c_15 | Rep_957_c_15_55 | 55661 | 56740 | + | GT4 |
| CAZyme | Rep_957_c_15 | Rep_957_c_15_56 | 56740 | 57759 | + | GT8 |
| CAZyme | Rep_957_c_15 | Rep_957_c_15_57 | 57799 | 58815 | + | GT8 |
| pfam | Rep_957_c_15 | Rep_957_c_15_58 | 58833 | 59531 | + | ABC1 | WaaY |
| CAZyme | Rep_957_c_15 | Rep_957_c_15_59 | 59606 | 60457 | + | GT73 |
| CAZyme | Rep_957_c_15 | Rep_957_c_15_60 | 60490 | 61563 | + | GT9 |
| TC | Rep_957_c_15 | Rep_957_c_15_61 | 61589 | 62854 | - | 9.B.67.5.1 |
| CAZyme | Rep_957_c_15 | Rep_957_c_15_62 | 62864 | 63823 | - | GT9 |
| CAZyme | Rep_957_c_15 | Rep_957_c_15_63 | 63827 | 64873 | - | GT9 |
Gene ID: Rep_957_c_15_50
Type: CAZyme
Location: 49964 - 51241 (-)
Type: CAZyme
Location: 49964 - 51241 (-)
Gene ID: Rep_957_c_15_51
Type: CAZyme
Location: 51648 - 52718 (+)
Type: CAZyme
Location: 51648 - 52718 (+)
Gene ID: Rep_957_c_15_52
Type: CAZyme
Location: 52715 - 53839 (+)
Type: CAZyme
Location: 52715 - 53839 (+)
Gene ID: Rep_957_c_15_53
Type: pfam
Location: 53832 - 54629 (+)
Type: pfam
Location: 53832 - 54629 (+)
Gene ID: Rep_957_c_15_54
Type: CAZyme
Location: 54769 - 55641 (+)
Type: CAZyme
Location: 54769 - 55641 (+)
Gene ID: Rep_957_c_15_55
Type: CAZyme
Location: 55661 - 56740 (+)
Type: CAZyme
Location: 55661 - 56740 (+)
Gene ID: Rep_957_c_15_56
Type: CAZyme
Location: 56740 - 57759 (+)
Type: CAZyme
Location: 56740 - 57759 (+)
Gene ID: Rep_957_c_15_57
Type: CAZyme
Location: 57799 - 58815 (+)
Type: CAZyme
Location: 57799 - 58815 (+)
Gene ID: Rep_957_c_15_58
Type: pfam
Location: 58833 - 59531 (+)
Type: pfam
Location: 58833 - 59531 (+)
Gene ID: Rep_957_c_15_59
Type: CAZyme
Location: 59606 - 60457 (+)
Type: CAZyme
Location: 59606 - 60457 (+)
Gene ID: Rep_957_c_15_60
Type: CAZyme
Location: 60490 - 61563 (+)
Type: CAZyme
Location: 60490 - 61563 (+)
Gene ID: Rep_957_c_15_61
Type: TC
Location: 61589 - 62854 (-)
Type: TC
Location: 61589 - 62854 (-)
Gene ID: Rep_957_c_15_62
Type: CAZyme
Location: 62864 - 63823 (-)
Type: CAZyme
Location: 62864 - 63823 (-)
Gene ID: Rep_957_c_15_63
Type: CAZyme
Location: 63827 - 64873 (-)
Type: CAZyme
Location: 63827 - 64873 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia marmotae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_957_c_15_62 | omnivore > vegetarian | 1.51978 | 0.03395 |