dbCAN Logo

Cluster: Rep_957_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_957_c_1 Rep_957_c_1_279 294709 296391 + 2.A.14.1.2
peptidase Rep_957_c_1 Rep_957_c_1_280 296885 301450 + M98.001
TC Rep_957_c_1 Rep_957_c_1_281 301645 302454 + 3.A.15.2.1
pfam Rep_957_c_1 Rep_957_c_1_282 302520 302930 + T2SSS_2
pfam Rep_957_c_1 Rep_957_c_1_283 302948 303907 + T2SSC
TC Rep_957_c_1 Rep_957_c_1_284 303937 305997 + 1.B.22.1.1
TC Rep_957_c_1 Rep_957_c_1_285 305997 307490 + 3.A.15.1.1
TC Rep_957_c_1 Rep_957_c_1_286 307490 308713 + 3.A.15.1.1
TC Rep_957_c_1 Rep_957_c_1_287 308730 309185 + 3.A.15.1.1
pfam Rep_957_c_1 Rep_957_c_1_288 309189 309752 + GspH
TC Rep_957_c_1 Rep_957_c_1_289 309749 310120 + 3.A.15.3.1
TC Rep_957_c_1 Rep_957_c_1_290 310117 310722 + 3.A.15.1.1
TC Rep_957_c_1 Rep_957_c_1_291 310719 311696 + 3.A.15.1.1
pfam Rep_957_c_1 Rep_957_c_1_292 311693 312871 + T2SSL | GspL_C
TC Rep_957_c_1 Rep_957_c_1_293 312873 313409 + 3.A.15.3.1
NULL(UNKNOWN) Rep_957_c_1 Rep_957_c_1_294 314277 314393 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_957_c_1 Rep_957_c_1_295 314610 315386 + 3.A.1.101.1
TC Rep_957_c_1 Rep_957_c_1_296 315383 316051 + 3.A.1.101.1
pfam Rep_957_c_1 Rep_957_c_1_297 316299 319751 + Capsule_synth
NULL(UNKNOWN) Rep_957_c_1 Rep_957_c_1_298 319880 320479 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_957_c_1 Rep_957_c_1_299 320600 321838 - 9.A.41.1.3
CAZyme Rep_957_c_1 Rep_957_c_1_300 321873 323900 - GT107 | GT107
pfam Rep_957_c_1 Rep_957_c_1_301 323897 324637 - CTP_transf_3 | NTP_transf_3
TC Rep_957_c_1 Rep_957_c_1_302 324647 326323 - 1.B.18.1.2
TC Rep_957_c_1 Rep_957_c_1_303 326347 327462 - 8.A.4.1.1
Gene ID: Rep_957_c_1_279
Type: TC
Location: 294709 - 296391 (+)
Gene ID: Rep_957_c_1_280
Type: peptidase
Location: 296885 - 301450 (+)
Gene ID: Rep_957_c_1_281
Type: TC
Location: 301645 - 302454 (+)
Gene ID: Rep_957_c_1_282
Type: pfam
Location: 302520 - 302930 (+)
Gene ID: Rep_957_c_1_283
Type: pfam
Location: 302948 - 303907 (+)
Gene ID: Rep_957_c_1_284
Type: TC
Location: 303937 - 305997 (+)
Gene ID: Rep_957_c_1_285
Type: TC
Location: 305997 - 307490 (+)
Gene ID: Rep_957_c_1_286
Type: TC
Location: 307490 - 308713 (+)
Gene ID: Rep_957_c_1_287
Type: TC
Location: 308730 - 309185 (+)
Gene ID: Rep_957_c_1_288
Type: pfam
Location: 309189 - 309752 (+)
Gene ID: Rep_957_c_1_289
Type: TC
Location: 309749 - 310120 (+)
Gene ID: Rep_957_c_1_290
Type: TC
Location: 310117 - 310722 (+)
Gene ID: Rep_957_c_1_291
Type: TC
Location: 310719 - 311696 (+)
Gene ID: Rep_957_c_1_292
Type: pfam
Location: 311693 - 312871 (+)
Gene ID: Rep_957_c_1_293
Type: TC
Location: 312873 - 313409 (+)
Gene ID: Rep_957_c_1_294
Type:
Location: 314277 - 314393 (-)
Gene ID: Rep_957_c_1_295
Type: TC
Location: 314610 - 315386 (+)
Gene ID: Rep_957_c_1_296
Type: TC
Location: 315383 - 316051 (+)
Gene ID: Rep_957_c_1_297
Type: pfam
Location: 316299 - 319751 (+)
Gene ID: Rep_957_c_1_298
Type:
Location: 319880 - 320479 (+)
Gene ID: Rep_957_c_1_299
Type: TC
Location: 320600 - 321838 (-)
Gene ID: Rep_957_c_1_300
Type: CAZyme
Location: 321873 - 323900 (-)
Gene ID: Rep_957_c_1_301
Type: pfam
Location: 323897 - 324637 (-)
Gene ID: Rep_957_c_1_302
Type: TC
Location: 324647 - 326323 (-)
Gene ID: Rep_957_c_1_303
Type: TC
Location: 326347 - 327462 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_957_c_1_286 omnivore > vegetarian 2.38409 0.03394
Rep_957_c_1_287 omnivore > vegetarian 2.12288 0.03394
Rep_957_c_1_288 omnivore > vegetarian 2.67910 0.03111
Rep_957_c_1_291 omnivore > vegetarian 1.99412 0.03449
Rep_957_c_1_295 omnivore > vegetarian 1.63615 0.03449
Rep_957_c_1_299 omnivore > vegetarian 2.97560 0.03449

🧭 Explore Read Mapping of CGC

← Back to Cluster List