Cluster: Rep_957_CGC26
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_957
- CGC Family ID: CGCFAM_00123
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_957_c_7 | Rep_957_c_7_82 | 84559 | 87099 | - | 1.B.11.3.5 |
| pfam | Rep_957_c_7 | Rep_957_c_7_83 | 87192 | 87944 | - | PapD_N | PapD_C |
| pfam | Rep_957_c_7 | Rep_957_c_7_84 | 88066 | 88770 | - | Fimbrial |
| CAZyme | Rep_957_c_7 | Rep_957_c_7_85 | 89254 | 91701 | - | GT35 |
| CAZyme | Rep_957_c_7 | Rep_957_c_7_86 | 91720 | 93153 | - | GT5 |
| pfam | Rep_957_c_7 | Rep_957_c_7_87 | 93153 | 94448 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | Rep_957_c_7 | Rep_957_c_7_88 | 94466 | 96439 | - | CBM48 | GH13_11 |
| CAZyme | Rep_957_c_7 | Rep_957_c_7_89 | 96436 | 98622 | - | CBM48 | GH13_9 |
| pfam | Rep_957_c_7 | Rep_957_c_7_90 | 98894 | 99997 | - | Semialdhyde_dh | Semialdhyde_dhC |
| TC | Rep_957_c_7 | Rep_957_c_7_91 | 100190 | 100783 | + | 2.A.95.1.5 |
| NULL(UNKNOWN) | Rep_957_c_7 | Rep_957_c_7_92 | 100641 | 100928 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_957_c_7 | Rep_957_c_7_93 | 101069 | 102409 | - | 2.A.8.1.8 |
Gene ID: Rep_957_c_7_82
Type: TC
Location: 84559 - 87099 (-)
Type: TC
Location: 84559 - 87099 (-)
Gene ID: Rep_957_c_7_83
Type: pfam
Location: 87192 - 87944 (-)
Type: pfam
Location: 87192 - 87944 (-)
Gene ID: Rep_957_c_7_84
Type: pfam
Location: 88066 - 88770 (-)
Type: pfam
Location: 88066 - 88770 (-)
Gene ID: Rep_957_c_7_85
Type: CAZyme
Location: 89254 - 91701 (-)
Type: CAZyme
Location: 89254 - 91701 (-)
Gene ID: Rep_957_c_7_86
Type: CAZyme
Location: 91720 - 93153 (-)
Type: CAZyme
Location: 91720 - 93153 (-)
Gene ID: Rep_957_c_7_87
Type: pfam
Location: 93153 - 94448 (-)
Type: pfam
Location: 93153 - 94448 (-)
Gene ID: Rep_957_c_7_88
Type: CAZyme
Location: 94466 - 96439 (-)
Type: CAZyme
Location: 94466 - 96439 (-)
Gene ID: Rep_957_c_7_89
Type: CAZyme
Location: 96436 - 98622 (-)
Type: CAZyme
Location: 96436 - 98622 (-)
Gene ID: Rep_957_c_7_90
Type: pfam
Location: 98894 - 99997 (-)
Type: pfam
Location: 98894 - 99997 (-)
Gene ID: Rep_957_c_7_91
Type: TC
Location: 100190 - 100783 (+)
Type: TC
Location: 100190 - 100783 (+)
Gene ID: Rep_957_c_7_92
Type:
Location: 100641 - 100928 (-)
Type:
Location: 100641 - 100928 (-)
Gene ID: Rep_957_c_7_93
Type: TC
Location: 101069 - 102409 (-)
Type: TC
Location: 101069 - 102409 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia marmotae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_957_c_7_86 | omnivore > vegetarian | 1.05114 | 0.03395 |