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Cluster: Rep_957_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_957_c_12 Rep_957_c_12_33 37166 38161 + 9.B.97.1.1
TC Rep_957_c_12 Rep_957_c_12_34 38198 38635 - 9.B.44.1.1
TC Rep_957_c_12 Rep_957_c_12_35 38681 39022 - 9.B.44.1.1
pfam Rep_957_c_12 Rep_957_c_12_36 39190 40644 - FGGY_N | FGGY_C
NULL(UNKNOWN) Rep_957_c_12 Rep_957_c_12_37 40715 42037 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_957_c_12 Rep_957_c_12_38 42404 43396 + 3.A.1.2.4
TC Rep_957_c_12 Rep_957_c_12_39 43475 45016 + 3.A.1.2.4
TC Rep_957_c_12 Rep_957_c_12_40 44994 46175 + 3.A.1.2.4
TF Rep_957_c_12 Rep_957_c_12_41 46254 47432 + HTH_AraC | HTH_AraC
CAZyme Rep_957_c_12 Rep_957_c_12_42 47562 48386 - GH73
CAZyme Rep_957_c_12 Rep_957_c_12_43 48798 50828 + GH13_19
STP Rep_957_c_12 Rep_957_c_12_44 51004 52257 + Aminotran_1_2
TC Rep_957_c_12 Rep_957_c_12_45 52454 52927 - 3.D.1.9.1
Gene ID: Rep_957_c_12_33
Type: TC
Location: 37166 - 38161 (+)
Gene ID: Rep_957_c_12_34
Type: TC
Location: 38198 - 38635 (-)
Gene ID: Rep_957_c_12_35
Type: TC
Location: 38681 - 39022 (-)
Gene ID: Rep_957_c_12_36
Type: pfam
Location: 39190 - 40644 (-)
Gene ID: Rep_957_c_12_37
Type:
Location: 40715 - 42037 (-)
Gene ID: Rep_957_c_12_38
Type: TC
Location: 42404 - 43396 (+)
Gene ID: Rep_957_c_12_39
Type: TC
Location: 43475 - 45016 (+)
Gene ID: Rep_957_c_12_40
Type: TC
Location: 44994 - 46175 (+)
Gene ID: Rep_957_c_12_41
Type: TF
Location: 46254 - 47432 (+)
Gene ID: Rep_957_c_12_42
Type: CAZyme
Location: 47562 - 48386 (-)
Gene ID: Rep_957_c_12_43
Type: CAZyme
Location: 48798 - 50828 (+)
Gene ID: Rep_957_c_12_44
Type: STP
Location: 51004 - 52257 (+)
Gene ID: Rep_957_c_12_45
Type: TC
Location: 52454 - 52927 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_957_c_12_35 omnivore > vegetarian 2.02826 0.03395
Rep_957_c_12_40 omnivore > vegetarian 1.62680 0.03395
Rep_957_c_12_43 omnivore > vegetarian 1.22762 0.03395

🧭 Explore Read Mapping of CGC

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