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Cluster: Rep_957_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_957_c_0 Rep_957_c_0_177 180808 182226 + 4.A.2.1.17
CAZyme Rep_957_c_0 Rep_957_c_0_178 182360 184057 + GH37
STP Rep_957_c_0 Rep_957_c_0_179 184395 185417 + Peripla_BP_2
TC Rep_957_c_0 Rep_957_c_0_180 185417 186403 + 3.A.1.14.11
TC Rep_957_c_0 Rep_957_c_0_181 186400 187158 + 3.A.1.14.8
pfam Rep_957_c_0 Rep_957_c_0_182 187168 187980 + Methyltransf_11 | Methyltransf_12 | Methyltransf_25 | Methyltransf_31
pfam Rep_957_c_0 Rep_957_c_0_183 187977 188831 + QRPTase_C | QRPTase_N
TC Rep_957_c_0 Rep_957_c_0_184 188857 190827 + 1.B.14.4.3
TC Rep_957_c_0 Rep_957_c_0_185 190877 191131 - 1.E.43.1.1
pfam Rep_957_c_0 Rep_957_c_0_186 191331 192065 + PilZ | PilZN
CAZyme Rep_957_c_0 Rep_957_c_0_187 192067 192678 - GH23
peptidase Rep_957_c_0 Rep_957_c_0_188 192778 193692 + S66.UPW
TC Rep_957_c_0 Rep_957_c_0_189 193788 195530 + 2.A.36.6.11
Gene ID: Rep_957_c_0_177
Type: TC
Location: 180808 - 182226 (+)
Gene ID: Rep_957_c_0_178
Type: CAZyme
Location: 182360 - 184057 (+)
Gene ID: Rep_957_c_0_179
Type: STP
Location: 184395 - 185417 (+)
Gene ID: Rep_957_c_0_180
Type: TC
Location: 185417 - 186403 (+)
Gene ID: Rep_957_c_0_181
Type: TC
Location: 186400 - 187158 (+)
Gene ID: Rep_957_c_0_182
Type: pfam
Location: 187168 - 187980 (+)
Gene ID: Rep_957_c_0_183
Type: pfam
Location: 187977 - 188831 (+)
Gene ID: Rep_957_c_0_184
Type: TC
Location: 188857 - 190827 (+)
Gene ID: Rep_957_c_0_185
Type: TC
Location: 190877 - 191131 (-)
Gene ID: Rep_957_c_0_186
Type: pfam
Location: 191331 - 192065 (+)
Gene ID: Rep_957_c_0_187
Type: CAZyme
Location: 192067 - 192678 (-)
Gene ID: Rep_957_c_0_188
Type: peptidase
Location: 192778 - 193692 (+)
Gene ID: Rep_957_c_0_189
Type: TC
Location: 193788 - 195530 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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