Cluster: Rep_957_CGC30
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_957
- CGC Family ID: CGCFAM_11309
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_957_c_9 | Rep_957_c_9_1 | 2 | 610 | - | 1.B.55.3.1 |
| TC | Rep_957_c_9 | Rep_957_c_9_2 | 729 | 3029 | - | 4.D.3.1.6 |
| CAZyme | Rep_957_c_9 | Rep_957_c_9_3 | 3096 | 5210 | - | GT2 |
| STP | Rep_957_c_9 | Rep_957_c_9_4 | 5295 | 6596 | - | GGDEF |
| STP | Rep_957_c_9 | Rep_957_c_9_5 | 6640 | 8988 | - | EAL |
| TC | Rep_957_c_9 | Rep_957_c_9_6 | 10331 | 11455 | - | 2.A.1.26.1 |
| pfam | Rep_957_c_9 | Rep_957_c_9_7 | 11794 | 12420 | + | Isochorismatase |
| TC | Rep_957_c_9 | Rep_957_c_9_8 | 12456 | 13319 | - | 5.A.3.3.2 |
| TC | Rep_957_c_9 | Rep_957_c_9_9 | 13321 | 13938 | - | 5.A.3.3.2 |
| TC | Rep_957_c_9 | Rep_957_c_9_10 | 13949 | 16393 | - | 5.A.3.3.2 |
| pfam | Rep_957_c_9 | Rep_957_c_9_11 | 16632 | 17924 | - | tRNA-synt_2b | Seryl_tRNA_N |
| STP | Rep_957_c_9 | Rep_957_c_9_12 | 18015 | 19358 | - | AAA |
| TC | Rep_957_c_9 | Rep_957_c_9_13 | 19368 | 19979 | - | 1.B.46.1.1 |
| TC | Rep_957_c_9 | Rep_957_c_9_14 | 20138 | 24091 | - | 3.A.12.1.2 |
| TF | Rep_957_c_9 | Rep_957_c_9_15 | 24226 | 24720 | - | 0040517 |
| STP | Rep_957_c_9 | Rep_957_c_9_16 | 25265 | 26230 | + | Pyr_redox_2 |
| TC | Rep_957_c_9 | Rep_957_c_9_17 | 26353 | 28119 | + | 3.A.1.129.1 |
| TC | Rep_957_c_9 | Rep_957_c_9_18 | 28120 | 29841 | + | 3.A.1.129.1 |
Gene ID: Rep_957_c_9_1
Type: TC
Location: 2 - 610 (-)
Type: TC
Location: 2 - 610 (-)
Gene ID: Rep_957_c_9_2
Type: TC
Location: 729 - 3029 (-)
Type: TC
Location: 729 - 3029 (-)
Gene ID: Rep_957_c_9_3
Type: CAZyme
Location: 3096 - 5210 (-)
Type: CAZyme
Location: 3096 - 5210 (-)
Gene ID: Rep_957_c_9_4
Type: STP
Location: 5295 - 6596 (-)
Type: STP
Location: 5295 - 6596 (-)
Gene ID: Rep_957_c_9_5
Type: STP
Location: 6640 - 8988 (-)
Type: STP
Location: 6640 - 8988 (-)
Gene ID: Rep_957_c_9_6
Type: TC
Location: 10331 - 11455 (-)
Type: TC
Location: 10331 - 11455 (-)
Gene ID: Rep_957_c_9_7
Type: pfam
Location: 11794 - 12420 (+)
Type: pfam
Location: 11794 - 12420 (+)
Gene ID: Rep_957_c_9_8
Type: TC
Location: 12456 - 13319 (-)
Type: TC
Location: 12456 - 13319 (-)
Gene ID: Rep_957_c_9_9
Type: TC
Location: 13321 - 13938 (-)
Type: TC
Location: 13321 - 13938 (-)
Gene ID: Rep_957_c_9_10
Type: TC
Location: 13949 - 16393 (-)
Type: TC
Location: 13949 - 16393 (-)
Gene ID: Rep_957_c_9_11
Type: pfam
Location: 16632 - 17924 (-)
Type: pfam
Location: 16632 - 17924 (-)
Gene ID: Rep_957_c_9_12
Type: STP
Location: 18015 - 19358 (-)
Type: STP
Location: 18015 - 19358 (-)
Gene ID: Rep_957_c_9_13
Type: TC
Location: 19368 - 19979 (-)
Type: TC
Location: 19368 - 19979 (-)
Gene ID: Rep_957_c_9_14
Type: TC
Location: 20138 - 24091 (-)
Type: TC
Location: 20138 - 24091 (-)
Gene ID: Rep_957_c_9_15
Type: TF
Location: 24226 - 24720 (-)
Type: TF
Location: 24226 - 24720 (-)
Gene ID: Rep_957_c_9_16
Type: STP
Location: 25265 - 26230 (+)
Type: STP
Location: 25265 - 26230 (+)
Gene ID: Rep_957_c_9_17
Type: TC
Location: 26353 - 28119 (+)
Type: TC
Location: 26353 - 28119 (+)
Gene ID: Rep_957_c_9_18
Type: TC
Location: 28120 - 29841 (+)
Type: TC
Location: 28120 - 29841 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia marmotae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_957_c_9_7 | omnivore > vegetarian | 1.18153 | 0.03394 |
| Rep_957_c_9_8 | omnivore > vegetarian | 1.21351 | 0.03395 |
| Rep_957_c_9_17 | omnivore > vegetarian | 1.44386 | 0.03111 |
| Rep_957_c_9_18 | omnivore > vegetarian | 1.18966 | 0.03395 |