Cluster: Rep_957_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: Rep_957
- CGC Family ID: CGCFAM_01811
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_957_c_2 | Rep_957_c_2_1 | 343 | 1602 | + | 2.A.39.1.1 |
| peptidase | Rep_957_c_2 | Rep_957_c_2_2 | 1592 | 2875 | + | M38.UNW |
| pfam | Rep_957_c_2 | Rep_957_c_2_3 | 2966 | 3571 | - | Hexapep | Mac | Hexapep_2 |
| TC | Rep_957_c_2 | Rep_957_c_2_4 | 3637 | 4890 | - | 2.A.1.5.1 |
| CAZyme | Rep_957_c_2 | Rep_957_c_2_5 | 4942 | 8016 | - | GH2 |
Gene ID: Rep_957_c_2_1
Type: TC
Location: 343 - 1602 (+)
Type: TC
Location: 343 - 1602 (+)
Gene ID: Rep_957_c_2_2
Type: peptidase
Location: 1592 - 2875 (+)
Type: peptidase
Location: 1592 - 2875 (+)
Gene ID: Rep_957_c_2_3
Type: pfam
Location: 2966 - 3571 (-)
Type: pfam
Location: 2966 - 3571 (-)
Gene ID: Rep_957_c_2_4
Type: TC
Location: 3637 - 4890 (-)
Type: TC
Location: 3637 - 4890 (-)
Gene ID: Rep_957_c_2_5
Type: CAZyme
Location: 4942 - 8016 (-)
Type: CAZyme
Location: 4942 - 8016 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia marmotae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_957_c_2_1 | omnivore > vegetarian | 1.06130 | 0.04949 |
| Rep_957_c_2_3 | omnivore > vegetarian | 1.64268 | 0.04992 |