Genome Details
Selected Rep_genome_ID: Rep_616
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes senegalensis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR038408 | 3,575,693 | 98.4% | 0.48% | China | Asia | CGMR |
| Rep_616 | 3,321,719 | 99.7596% | 0.480769% | NA | NA | WIS |
| SW157_bin.77 | 3,362,600 | 91.89% | 2.5% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_616_CGC42 | CGCFAM_00219 | Yes | 7 | 4 | host glycan |
| Rep_616_CGC34 | CGCFAM_00332 | Yes | 12 | 8 | |
| Rep_616_CGC1 | CGCFAM_00404 | Yes | 8 | 2 | |
| Rep_616_CGC25 | CGCFAM_00439 | Yes | 20 | 5 | host glycan |
| Rep_616_CGC39 | CGCFAM_00439 | Yes | 11 | 5 | host glycan |
| Rep_616_CGC6 | CGCFAM_00475 | Yes | 20 | 4 | |
| Rep_616_CGC21 | CGCFAM_00540 | Yes | 7 | 4 | pectin |
| Rep_616_CGC24 | CGCFAM_00632 | Yes | 8 | 1 | |
| Rep_616_CGC10 | CGCFAM_00838 | Yes | 3 | 1 | |
| Rep_616_CGC26 | CGCFAM_00921 | Yes | 10 | 1 | |
| Rep_616_CGC4 | CGCFAM_01496 | Yes | 18 | 9 | |
| Rep_616_CGC5 | CGCFAM_02181 | Yes | 7 | 1 | |
| Rep_616_CGC29 | CGCFAM_02409 | Yes | 4 | 1 | |
| Rep_616_CGC8 | CGCFAM_03767 | Yes | 17 | 3 | |
| Rep_616_CGC30 | CGCFAM_05336 | Yes | 7 | 3 | |
| Rep_616_CGC17 | CGCFAM_05937 | Yes | 7 | 5 | |
| Rep_616_CGC32 | CGCFAM_08252 | Yes | 4 | 1 | |
| Rep_616_CGC23 | CGCFAM_09641 | Yes | 8 | 5 | |
| Rep_616_CGC18 | CGCFAM_09704 | Yes | 4 | 1 |
Top CAZyme Families