Cluster: Rep_616_CGC39
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate: host glycan
- Genome ID: Rep_616
- CGC Family ID: CGCFAM_00439
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_616_c_9 | Rep_616_c_9_29 | 42883 | 45771 | - | 1.B.14.6.1 |
| pfam | Rep_616_c_9 | Rep_616_c_9_30 | 45795 | 47660 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_616_c_9 | Rep_616_c_9_31 | 47674 | 50862 | - | 1.B.14.6.1 |
| pfam | Rep_616_c_9 | Rep_616_c_9_32 | 50958 | 52550 | - | BACON | BACON | BACON | BACON_2 | BACON_2 | BACON_2 |
| CAZyme | Rep_616_c_9 | Rep_616_c_9_33 | 52666 | 53760 | - | GH105 |
| CAZyme | Rep_616_c_9 | Rep_616_c_9_34 | 53782 | 55800 | - | PL42 |
| CAZyme | Rep_616_c_9 | Rep_616_c_9_35 | 55823 | 57250 | - | PL42 |
| CAZyme | Rep_616_c_9 | Rep_616_c_9_36 | 57254 | 58435 | - | GH88 |
| TF | Rep_616_c_9 | Rep_616_c_9_37 | 58545 | 62612 | - | HTH_AraC |
| CAZyme | Rep_616_c_9 | Rep_616_c_9_38 | 62808 | 65000 | - | PL35 |
| TC | Rep_616_c_9 | Rep_616_c_9_39 | 65206 | 66636 | - | 2.A.1.1.3 |
Gene ID: Rep_616_c_9_29
Type: TC
Location: 42883 - 45771 (-)
Type: TC
Location: 42883 - 45771 (-)
Gene ID: Rep_616_c_9_30
Type: pfam
Location: 45795 - 47660 (-)
Type: pfam
Location: 45795 - 47660 (-)
Gene ID: Rep_616_c_9_31
Type: TC
Location: 47674 - 50862 (-)
Type: TC
Location: 47674 - 50862 (-)
Gene ID: Rep_616_c_9_32
Type: pfam
Location: 50958 - 52550 (-)
Type: pfam
Location: 50958 - 52550 (-)
Gene ID: Rep_616_c_9_33
Type: CAZyme
Location: 52666 - 53760 (-)
Type: CAZyme
Location: 52666 - 53760 (-)
Gene ID: Rep_616_c_9_34
Type: CAZyme
Location: 53782 - 55800 (-)
Type: CAZyme
Location: 53782 - 55800 (-)
Gene ID: Rep_616_c_9_35
Type: CAZyme
Location: 55823 - 57250 (-)
Type: CAZyme
Location: 55823 - 57250 (-)
Gene ID: Rep_616_c_9_36
Type: CAZyme
Location: 57254 - 58435 (-)
Type: CAZyme
Location: 57254 - 58435 (-)
Gene ID: Rep_616_c_9_37
Type: TF
Location: 58545 - 62612 (-)
Type: TF
Location: 58545 - 62612 (-)
Gene ID: Rep_616_c_9_38
Type: CAZyme
Location: 62808 - 65000 (-)
Type: CAZyme
Location: 62808 - 65000 (-)
Gene ID: Rep_616_c_9_39
Type: TC
Location: 65206 - 66636 (-)
Type: TC
Location: 65206 - 66636 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes senegalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_616_c_9_33 | vegetarian > omnivore | 1.11078 | 0.04776 |
| Rep_616_c_9_34 | vegetarian > omnivore | 1.09731 | 0.04776 |
| Rep_616_c_9_39 | vegan > omnivore | 1.19416 | 0.02017 |