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Cluster: Rep_616_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_616_c_4 Rep_616_c_4_158 199544 201328 + GH2
CAZyme Rep_616_c_4 Rep_616_c_4_159 201341 202528 + GH88
CAZyme Rep_616_c_4 Rep_616_c_4_160 202525 203784 + CE15
CAZyme Rep_616_c_4 Rep_616_c_4_161 203806 206523 + GH2
pfam Rep_616_c_4 Rep_616_c_4_162 206536 207309 + BetaGal_ABD_1 | BetaGal_gal-bd
CAZyme Rep_616_c_4 Rep_616_c_4_163 207336 209540 + GH3
NULL(UNKNOWN) Rep_616_c_4 Rep_616_c_4_164 209730 212153 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_616_c_4 Rep_616_c_4_165 212245 213351 + 3.D.2.3.1
Gene ID: Rep_616_c_4_158
Type: CAZyme
Location: 199544 - 201328 (+)
Gene ID: Rep_616_c_4_159
Type: CAZyme
Location: 201341 - 202528 (+)
Gene ID: Rep_616_c_4_160
Type: CAZyme
Location: 202525 - 203784 (+)
Gene ID: Rep_616_c_4_161
Type: CAZyme
Location: 203806 - 206523 (+)
Gene ID: Rep_616_c_4_162
Type: pfam
Location: 206536 - 207309 (+)
Gene ID: Rep_616_c_4_163
Type: CAZyme
Location: 207336 - 209540 (+)
Gene ID: Rep_616_c_4_164
Type:
Location: 209730 - 212153 (+)
Gene ID: Rep_616_c_4_165
Type: TC
Location: 212245 - 213351 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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