Cluster: Rep_616_CGC4
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_616
- CGC Family ID: CGCFAM_01496
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_616_c_0 | Rep_616_c_0_185 | 230715 | 231794 | + | GT4 |
| TC | Rep_616_c_0 | Rep_616_c_0_186 | 231803 | 232861 | + | 9.B.183.1.5 |
| CAZyme | Rep_616_c_0 | Rep_616_c_0_187 | 232886 | 233743 | + | GT2 |
| pfam | Rep_616_c_0 | Rep_616_c_0_188 | 233745 | 234410 | + | HAD |
| NULL(UNKNOWN) | Rep_616_c_0 | Rep_616_c_0_189 | 234495 | 235223 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_616_c_0 | Rep_616_c_0_190 | 235238 | 236044 | + | GT2 |
| pfam | Rep_616_c_0 | Rep_616_c_0_191 | 236273 | 236884 | + | Hexapep | Hexapep_2 |
| CAZyme | Rep_616_c_0 | Rep_616_c_0_192 | 236894 | 237742 | + | CE4 |
| CAZyme | Rep_616_c_0 | Rep_616_c_0_193 | 237836 | 239413 | - | GH20 |
| pfam | Rep_616_c_0 | Rep_616_c_0_194 | 239427 | 240620 | - | Lipase_GDSL_2 |
| pfam | Rep_616_c_0 | Rep_616_c_0_195 | 240671 | 242818 | - | Fib_succ_major | SusE | SusE |
| CAZyme | Rep_616_c_0 | Rep_616_c_0_196 | 242830 | 244527 | - | GH136 |
| pfam | Rep_616_c_0 | Rep_616_c_0_197 | 244554 | 245669 | - | Fib_succ_major |
| pfam | Rep_616_c_0 | Rep_616_c_0_198 | 245688 | 247295 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_616_c_0 | Rep_616_c_0_199 | 247299 | 250376 | - | 1.B.14.6.1 |
| CAZyme | Rep_616_c_0 | Rep_616_c_0_200 | 250438 | 251550 | - | GH43_24 |
| CAZyme | Rep_616_c_0 | Rep_616_c_0_201 | 251559 | 253418 | - | GH110 |
| CAZyme | Rep_616_c_0 | Rep_616_c_0_202 | 253429 | 255270 | - | GH110 |
Gene ID: Rep_616_c_0_185
Type: CAZyme
Location: 230715 - 231794 (+)
Type: CAZyme
Location: 230715 - 231794 (+)
Gene ID: Rep_616_c_0_186
Type: TC
Location: 231803 - 232861 (+)
Type: TC
Location: 231803 - 232861 (+)
Gene ID: Rep_616_c_0_187
Type: CAZyme
Location: 232886 - 233743 (+)
Type: CAZyme
Location: 232886 - 233743 (+)
Gene ID: Rep_616_c_0_188
Type: pfam
Location: 233745 - 234410 (+)
Type: pfam
Location: 233745 - 234410 (+)
Gene ID: Rep_616_c_0_189
Type:
Location: 234495 - 235223 (+)
Type:
Location: 234495 - 235223 (+)
Gene ID: Rep_616_c_0_190
Type: CAZyme
Location: 235238 - 236044 (+)
Type: CAZyme
Location: 235238 - 236044 (+)
Gene ID: Rep_616_c_0_191
Type: pfam
Location: 236273 - 236884 (+)
Type: pfam
Location: 236273 - 236884 (+)
Gene ID: Rep_616_c_0_192
Type: CAZyme
Location: 236894 - 237742 (+)
Type: CAZyme
Location: 236894 - 237742 (+)
Gene ID: Rep_616_c_0_193
Type: CAZyme
Location: 237836 - 239413 (-)
Type: CAZyme
Location: 237836 - 239413 (-)
Gene ID: Rep_616_c_0_194
Type: pfam
Location: 239427 - 240620 (-)
Type: pfam
Location: 239427 - 240620 (-)
Gene ID: Rep_616_c_0_195
Type: pfam
Location: 240671 - 242818 (-)
Type: pfam
Location: 240671 - 242818 (-)
Gene ID: Rep_616_c_0_196
Type: CAZyme
Location: 242830 - 244527 (-)
Type: CAZyme
Location: 242830 - 244527 (-)
Gene ID: Rep_616_c_0_197
Type: pfam
Location: 244554 - 245669 (-)
Type: pfam
Location: 244554 - 245669 (-)
Gene ID: Rep_616_c_0_198
Type: pfam
Location: 245688 - 247295 (-)
Type: pfam
Location: 245688 - 247295 (-)
Gene ID: Rep_616_c_0_199
Type: TC
Location: 247299 - 250376 (-)
Type: TC
Location: 247299 - 250376 (-)
Gene ID: Rep_616_c_0_200
Type: CAZyme
Location: 250438 - 251550 (-)
Type: CAZyme
Location: 250438 - 251550 (-)
Gene ID: Rep_616_c_0_201
Type: CAZyme
Location: 251559 - 253418 (-)
Type: CAZyme
Location: 251559 - 253418 (-)
Gene ID: Rep_616_c_0_202
Type: CAZyme
Location: 253429 - 255270 (-)
Type: CAZyme
Location: 253429 - 255270 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes senegalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_616_c_0_190 | vegan > omnivore | 1.54853 | 0.02486 |