Cluster: Rep_616_CGC25
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 5
- Substrate: host glycan
- Genome ID: Rep_616
- CGC Family ID: CGCFAM_00439
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_616_c_5 | Rep_616_c_5_160 | 180267 | 181232 | + | 3.D.6.1.2 |
| TC | Rep_616_c_5 | Rep_616_c_5_161 | 181393 | 182739 | + | 3.D.6.1.2 |
| TC | Rep_616_c_5 | Rep_616_c_5_162 | 182920 | 183885 | + | 3.D.6.1.2 |
| TC | Rep_616_c_5 | Rep_616_c_5_163 | 183899 | 184567 | + | 3.D.6.1.4 |
| TC | Rep_616_c_5 | Rep_616_c_5_164 | 184581 | 185144 | + | 3.D.6.1.2 |
| TC | Rep_616_c_5 | Rep_616_c_5_165 | 185147 | 185725 | + | 3.D.6.1.2 |
| CAZyme | Rep_616_c_5 | Rep_616_c_5_166 | 186090 | 187079 | - | GH43_3 |
| CAZyme | Rep_616_c_5 | Rep_616_c_5_167 | 187103 | 189268 | - | PL8 |
| NULL(UNKNOWN) | Rep_616_c_5 | Rep_616_c_5_168 | 189279 | 190313 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_616_c_5 | Rep_616_c_5_169 | 190327 | 192084 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_616_c_5 | Rep_616_c_5_170 | 192097 | 194991 | - | 1.B.14.6.1 |
| pfam | Rep_616_c_5 | Rep_616_c_5_171 | 195001 | 196854 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_616_c_5 | Rep_616_c_5_172 | 196876 | 200037 | - | 1.B.14.6.1 |
| pfam | Rep_616_c_5 | Rep_616_c_5_173 | 200123 | 201808 | - | BACON | BACON | BACON | BACON_2 | BACON_2 |
| CAZyme | Rep_616_c_5 | Rep_616_c_5_174 | 201865 | 202968 | - | GH105 |
| CAZyme | Rep_616_c_5 | Rep_616_c_5_175 | 203021 | 204451 | - | PL42 |
| TF | Rep_616_c_5 | Rep_616_c_5_176 | 204569 | 208591 | - | HTH_AraC |
| CAZyme | Rep_616_c_5 | Rep_616_c_5_177 | 208707 | 210893 | - | PL35 |
| pfam | Rep_616_c_5 | Rep_616_c_5_178 | 211128 | 212354 | + | Phage_integrase | Phage_int_SAM_5 | Arm-DNA-bind_5 |
| TC | Rep_616_c_5 | Rep_616_c_5_179 | 212623 | 215691 | + | 1.B.14.6.1 |
Gene ID: Rep_616_c_5_160
Type: TC
Location: 180267 - 181232 (+)
Type: TC
Location: 180267 - 181232 (+)
Gene ID: Rep_616_c_5_161
Type: TC
Location: 181393 - 182739 (+)
Type: TC
Location: 181393 - 182739 (+)
Gene ID: Rep_616_c_5_162
Type: TC
Location: 182920 - 183885 (+)
Type: TC
Location: 182920 - 183885 (+)
Gene ID: Rep_616_c_5_163
Type: TC
Location: 183899 - 184567 (+)
Type: TC
Location: 183899 - 184567 (+)
Gene ID: Rep_616_c_5_164
Type: TC
Location: 184581 - 185144 (+)
Type: TC
Location: 184581 - 185144 (+)
Gene ID: Rep_616_c_5_165
Type: TC
Location: 185147 - 185725 (+)
Type: TC
Location: 185147 - 185725 (+)
Gene ID: Rep_616_c_5_166
Type: CAZyme
Location: 186090 - 187079 (-)
Type: CAZyme
Location: 186090 - 187079 (-)
Gene ID: Rep_616_c_5_167
Type: CAZyme
Location: 187103 - 189268 (-)
Type: CAZyme
Location: 187103 - 189268 (-)
Gene ID: Rep_616_c_5_168
Type:
Location: 189279 - 190313 (-)
Type:
Location: 189279 - 190313 (-)
Gene ID: Rep_616_c_5_169
Type: pfam
Location: 190327 - 192084 (-)
Type: pfam
Location: 190327 - 192084 (-)
Gene ID: Rep_616_c_5_170
Type: TC
Location: 192097 - 194991 (-)
Type: TC
Location: 192097 - 194991 (-)
Gene ID: Rep_616_c_5_171
Type: pfam
Location: 195001 - 196854 (-)
Type: pfam
Location: 195001 - 196854 (-)
Gene ID: Rep_616_c_5_172
Type: TC
Location: 196876 - 200037 (-)
Type: TC
Location: 196876 - 200037 (-)
Gene ID: Rep_616_c_5_173
Type: pfam
Location: 200123 - 201808 (-)
Type: pfam
Location: 200123 - 201808 (-)
Gene ID: Rep_616_c_5_174
Type: CAZyme
Location: 201865 - 202968 (-)
Type: CAZyme
Location: 201865 - 202968 (-)
Gene ID: Rep_616_c_5_175
Type: CAZyme
Location: 203021 - 204451 (-)
Type: CAZyme
Location: 203021 - 204451 (-)
Gene ID: Rep_616_c_5_176
Type: TF
Location: 204569 - 208591 (-)
Type: TF
Location: 204569 - 208591 (-)
Gene ID: Rep_616_c_5_177
Type: CAZyme
Location: 208707 - 210893 (-)
Type: CAZyme
Location: 208707 - 210893 (-)
Gene ID: Rep_616_c_5_178
Type: pfam
Location: 211128 - 212354 (+)
Type: pfam
Location: 211128 - 212354 (+)
Gene ID: Rep_616_c_5_179
Type: TC
Location: 212623 - 215691 (+)
Type: TC
Location: 212623 - 215691 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes senegalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_616_c_5_169 | vegetarian > vegan | 1.17331 | 0.02073 |