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Cluster: Rep_616_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_616_c_5 Rep_616_c_5_44 58090 59709 - 1.I.1.1.3
peptidase Rep_616_c_5 Rep_616_c_5_45 59891 60550 + M15.UPD
pfam Rep_616_c_5 Rep_616_c_5_46 60616 62091 + tRNA-synt_1e | DALR_2 | tRNA-synt_1g | CysS_C
TC Rep_616_c_5 Rep_616_c_5_47 62294 63667 + 2.A.66.1.32
TC Rep_616_c_5 Rep_616_c_5_48 63672 64304 + 2.A.115.2.14
NULL(UNKNOWN) Rep_616_c_5 Rep_616_c_5_49 64421 65092 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_616_c_5 Rep_616_c_5_50 65190 66302 + RF-1 | PCRF
CAZyme Rep_616_c_5 Rep_616_c_5_51 66364 67473 + GH171
Gene ID: Rep_616_c_5_44
Type: TC
Location: 58090 - 59709 (-)
Gene ID: Rep_616_c_5_45
Type: peptidase
Location: 59891 - 60550 (+)
Gene ID: Rep_616_c_5_46
Type: pfam
Location: 60616 - 62091 (+)
Gene ID: Rep_616_c_5_47
Type: TC
Location: 62294 - 63667 (+)
Gene ID: Rep_616_c_5_48
Type: TC
Location: 63672 - 64304 (+)
Gene ID: Rep_616_c_5_49
Type:
Location: 64421 - 65092 (+)
Gene ID: Rep_616_c_5_50
Type: pfam
Location: 65190 - 66302 (+)
Gene ID: Rep_616_c_5_51
Type: CAZyme
Location: 66364 - 67473 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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