Cluster: Rep_616_CGC34
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_616
- CGC Family ID: CGCFAM_00332
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_616_c_7 | Rep_616_c_7_96 | 145292 | 148477 | + | 1.B.14.6.1 |
| pfam | Rep_616_c_7 | Rep_616_c_7_97 | 148497 | 150383 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_616_c_7 | Rep_616_c_7_98 | 150416 | 153511 | + | 1.B.14.6.1 |
| pfam | Rep_616_c_7 | Rep_616_c_7_99 | 153525 | 155783 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_616_c_7 | Rep_616_c_7_100 | 155852 | 158335 | + | GH2 |
| CAZyme | Rep_616_c_7 | Rep_616_c_7_101 | 158423 | 161569 | + | GH106 |
| CAZyme | Rep_616_c_7 | Rep_616_c_7_102 | 161587 | 163284 | + | GH136 |
| CAZyme | Rep_616_c_7 | Rep_616_c_7_103 | 163299 | 165596 | + | GH3 |
| CAZyme | Rep_616_c_7 | Rep_616_c_7_104 | 165608 | 167956 | + | CBM67 | GH78 |
| CAZyme | Rep_616_c_7 | Rep_616_c_7_105 | 167976 | 170393 | + | CBM67 | GH78 |
| CAZyme | Rep_616_c_7 | Rep_616_c_7_106 | 170715 | 171554 | + | GH78 |
| CAZyme | Rep_616_c_7 | Rep_616_c_7_107 | 171570 | 173519 | + | CE20 | CE20 |
Gene ID: Rep_616_c_7_96
Type: TC
Location: 145292 - 148477 (+)
Type: TC
Location: 145292 - 148477 (+)
Gene ID: Rep_616_c_7_97
Type: pfam
Location: 148497 - 150383 (+)
Type: pfam
Location: 148497 - 150383 (+)
Gene ID: Rep_616_c_7_98
Type: TC
Location: 150416 - 153511 (+)
Type: TC
Location: 150416 - 153511 (+)
Gene ID: Rep_616_c_7_99
Type: pfam
Location: 153525 - 155783 (+)
Type: pfam
Location: 153525 - 155783 (+)
Gene ID: Rep_616_c_7_100
Type: CAZyme
Location: 155852 - 158335 (+)
Type: CAZyme
Location: 155852 - 158335 (+)
Gene ID: Rep_616_c_7_101
Type: CAZyme
Location: 158423 - 161569 (+)
Type: CAZyme
Location: 158423 - 161569 (+)
Gene ID: Rep_616_c_7_102
Type: CAZyme
Location: 161587 - 163284 (+)
Type: CAZyme
Location: 161587 - 163284 (+)
Gene ID: Rep_616_c_7_103
Type: CAZyme
Location: 163299 - 165596 (+)
Type: CAZyme
Location: 163299 - 165596 (+)
Gene ID: Rep_616_c_7_104
Type: CAZyme
Location: 165608 - 167956 (+)
Type: CAZyme
Location: 165608 - 167956 (+)
Gene ID: Rep_616_c_7_105
Type: CAZyme
Location: 167976 - 170393 (+)
Type: CAZyme
Location: 167976 - 170393 (+)
Gene ID: Rep_616_c_7_106
Type: CAZyme
Location: 170715 - 171554 (+)
Type: CAZyme
Location: 170715 - 171554 (+)
Gene ID: Rep_616_c_7_107
Type: CAZyme
Location: 171570 - 173519 (+)
Type: CAZyme
Location: 171570 - 173519 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes senegalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.