Cluster: Rep_616_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_616
- CGC Family ID: CGCFAM_00404
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_616_c_0 | Rep_616_c_0_47 | 44998 | 48216 | + | 1.B.14.6.1 |
| pfam | Rep_616_c_0 | Rep_616_c_0_48 | 48247 | 49743 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_616_c_0 | Rep_616_c_0_49 | 50210 | 51541 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_616_c_0 | Rep_616_c_0_50 | 51623 | 52840 | - | GH33 |
| CAZyme | Rep_616_c_0 | Rep_616_c_0_51 | 52877 | 54040 | - | GH33 |
| pfam | Rep_616_c_0 | Rep_616_c_0_52 | 54048 | 54986 | - | DHDPS |
| TF | Rep_616_c_0 | Rep_616_c_0_53 | 55268 | 55993 | + | GntR |
| TC | Rep_616_c_0 | Rep_616_c_0_54 | 56050 | 58623 | + | 2.A.21.3.7 |
Gene ID: Rep_616_c_0_47
Type: TC
Location: 44998 - 48216 (+)
Type: TC
Location: 44998 - 48216 (+)
Gene ID: Rep_616_c_0_48
Type: pfam
Location: 48247 - 49743 (+)
Type: pfam
Location: 48247 - 49743 (+)
Gene ID: Rep_616_c_0_49
Type:
Location: 50210 - 51541 (-)
Type:
Location: 50210 - 51541 (-)
Gene ID: Rep_616_c_0_50
Type: CAZyme
Location: 51623 - 52840 (-)
Type: CAZyme
Location: 51623 - 52840 (-)
Gene ID: Rep_616_c_0_51
Type: CAZyme
Location: 52877 - 54040 (-)
Type: CAZyme
Location: 52877 - 54040 (-)
Gene ID: Rep_616_c_0_52
Type: pfam
Location: 54048 - 54986 (-)
Type: pfam
Location: 54048 - 54986 (-)
Gene ID: Rep_616_c_0_53
Type: TF
Location: 55268 - 55993 (+)
Type: TF
Location: 55268 - 55993 (+)
Gene ID: Rep_616_c_0_54
Type: TC
Location: 56050 - 58623 (+)
Type: TC
Location: 56050 - 58623 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes senegalensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_616_c_0_47 | vegan > omnivore | 3.55085 | 0.02486 |
| Rep_616_c_0_47 | vegetarian > vegan | 1.16799 | 0.04188 |
| Rep_616_c_0_47 | vegetarian > omnivore | 4.71884 | 0.04413 |
| Rep_616_c_0_48 | vegan > omnivore | 3.69908 | 0.00566 |
| Rep_616_c_0_48 | vegetarian > vegan | 1.12514 | 0.04705 |
| Rep_616_c_0_48 | vegetarian > omnivore | 4.82422 | 0.04413 |
| Rep_616_c_0_49 | vegetarian > omnivore | 4.90960 | 0.04746 |
| Rep_616_c_0_49 | vegan > omnivore | 4.01523 | 0.00566 |
| Rep_616_c_0_50 | vegetarian > omnivore | 4.53054 | 0.02781 |
| Rep_616_c_0_50 | vegetarian > vegan | 1.22480 | 0.04705 |
| Rep_616_c_0_50 | vegan > omnivore | 3.30574 | 0.00566 |
| Rep_616_c_0_51 | vegan > omnivore | 3.61540 | 0.02203 |
| Rep_616_c_0_51 | vegetarian > vegan | 1.00927 | 0.04705 |
| Rep_616_c_0_52 | vegan > omnivore | 3.34047 | 0.03699 |
| Rep_616_c_0_52 | vegetarian > vegan | 1.11812 | 0.04705 |
| Rep_616_c_0_53 | vegan > omnivore | 4.02702 | 0.02486 |
| Rep_616_c_0_53 | vegetarian > omnivore | 5.02225 | 0.04776 |
| Rep_616_c_0_54 | vegetarian > vegan | 1.29692 | 0.04705 |
| Rep_616_c_0_54 | vegetarian > omnivore | 4.59465 | 0.04746 |
| Rep_616_c_0_54 | vegan > omnivore | 3.29773 | 0.00566 |